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View Structure Prediction Details

Protein: gi|22135793, gi|...
Organism: Arabidopsis thaliana
Length: 225 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22135793, gi|....

Description E-value Query
Range
Subject
Range
gi|3342551, gi|4... - gi|42571165|ref|NP_973656.1| M17 [Arabidopsis thaliana], gi|3894196|gb|AAC78545.1| late embryogenesi...
216.0 [0..1] [225..1]

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Predicted Domain #1
Region A:
Residues: [1-120]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNLKSLVLL ALLFSFSVAV FANTSNDATH DEVKPSTEAT HAIEAQKHDG KPQIAEAQVE  60
   61 ANDPVVEPQQ DWGGRGGCRW GCCGGWWRGR CRYCCRSQAE ASEVVETVEP NDVEPQQGGR 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.375 N/A N/A d.58.3 Protease propeptides/inhibitors
View Download 0.284 N/A N/A c.47.1 Thioredoxin-like
View Download 0.227 N/A N/A c.30.1 PreATP-grasp domain
View Download 0.217 N/A N/A d.58.36 Sulfite reductase, domains 1 and 3

Predicted Domain #2
Region A:
Residues: [121-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGGGGGGGGR GGCRWGCCGG WWRGRCRYCC RSQAEASEVV ETVEPNDVEP QQGGRGGGGG  60
   61 GGGGRGGCRW GCCGGWWRGR CRYCCRSQAE ANEVVETVEA QQAKP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.211 c.47.1 Thioredoxin-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle