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View Structure Prediction Details

Protein: RHD3_ARATH
Organism: Arabidopsis thaliana
Length: 802 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RHD3_ARATH.

Description E-value Query
Range		 Subject
Range
gi|47934042 - gi|47934042|gb|AAS67855.2| root hair defective 3 GTP-binding protein [Triticum aestivum]
 355.0 [0..1] [770..1]
RHD3_ORYSJ - Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica GN=RHD3 PE=2 SV=1
 355.0 [0..1] [784..1]
RHD32_ARATH - Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana GN=At5g45160 PE=2 SV=1
 348.0 [0..2] [793..5]
gi|169768782 - gi|169768782|ref|XP_001818861.1| hypothetical protein [Aspergillus oryzae RIB40]
gi|83766719 - gi|83766719|dbj|BAE56859.1| unnamed protein product [Aspergillus oryzae]
 322.0 [0..4] [799..21]
SEY1_ASPTN - Protein sey1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sey1 PE=3 SV=1
 315.0 [0..4] [799..21]
SEY1_ASPFC - Protein sey1 OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=sey1 PE=3 SV=1
SEY1_ASPFU - Protein sey1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sey...
SEY1_ASPFU - Protein sey1 OS=Aspergillus fumigatus GN=sey1 PE=3 SV=1
 305.0 [0..4] [799..20]

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Predicted Domain #1
Region A:
Residues: [1-550] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAACSTQLI DGDGVFNVSG VDHFIKEVKL DECGLSYAVV SIMGPQSSGK STLLNHLFGT  60
   61 NFREMDAFRG RSQTTKGIWI ARCAGIEPCT VVMDLEGTDG RERGEDDTAF EKQSALFALA 120
  121 VSDIVLINMW CHDIGREQAA NKPLLKTVFQ VMMRLFSPRK TTLMFVIRDK TRTPLENLEP 180
  181 VLREDIQKIW DSVPKPQAHK ETPLSDFFNV EVVALSSYEE KEEQFKEQVY NLRQRFFQSV 240
  241 APGGLAGDRR GVVPANAFAF SAKQMWQVIK DNKDLDLPAH KVMVATVRCE EIANEKFSSF 300
  301 IANENWRELE EAVQSGPVSG FGRKLSSILQ ASLSEYDTEA TYFEESVRSS KRQQLQEKLL 360
  361 QLVQPTFQDV LGHLRAGALE NFKNAFEKAL DAGEGFSSSA KSCAQSCISK FDKGCEEAVI 420
  421 EQAKWDTSKT REKLERDIEA HISSVRTAKL AELTTLYESK LNVALSGPVE ALLDGANDET 480
  481 WPAIRKLLRR EGELAVYGLS NALSGFEMDE ETRSKMLADL ENYARGIVET KAKEEAGRAM 540
  541 MRMKDRFATI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.30103
Match: 1dg3A
Description: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [551-677] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSHDSDSMPR VWTGKEDIRA ITKMARSASL KLLSVMAVIR LDDELDNIEK TLTLALFNST  60
   61 GNNATSKSIS TIDSLASSTW EKVAPEKTLI TPVQCKSLWR QFKNETEYTV TQAISAQEAN 120
  121 RRNNNWL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 10.69897
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [678-802] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPWAILALV VLGFNEFMTL LRNPLWLLVL FVGYLVSKAL WVQLNISGEF QNGVLPGLLS  60
   61 LSTKFIPTVM NLLKKLAEEG QAPPTNSNQS MNSTAQSEVT TNGESSSSSS SGSSPAKNVP 120
  121 IDTSA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle