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View Structure Prediction Details

Protein: GAUTF_ARATH
Organism: Arabidopsis thaliana
Length: 540 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GAUTF_ARATH.

Description E-value Query
Range
Subject
Range
gi|7630074, gi|1... - gi|7630074|emb|CAB88296.1| putative protein [Arabidopsis thaliana], pir||T49162 hypothetical protein...
476.0 [0..1] [540..1]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFYISATGI KKVTISNPGV GIGKGSGGCA AAAAALAARR FSSRTLLLLL LLLAIVLPFI  60
   61 FVRFAFLVLE SASVCDS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLDCMGLRLF RGGDTSLKIG EELTRALVEE TTDHQDVNGR GTKGSLESFD DLVKEMTLKR  60
   61 RDIRAFASVT KKMLLQMERK VQSAKHHELV YWHLASHGIP KSLHCLSLRL TEEYSVNAMA 120
  121 RMRLPPPESV SRLTDPSFHH IVLLTDNVLA ASVVISSTVQ NAVNPEKFVF HIVTDKKT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [256-540]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YTPMHAWFAI NSASSPVVEV KGLHQYDWPQ EVNFKVREML DIHRLIWRRH YQNLKDSDFS  60
   61 FVEGTHEQSL QALNPSCLAL LNHLRIYIPK LFPDLNKIVL LDDDVVVQSD LSSLWETDLN 120
  121 GKVVGAVVDS WCGDNCCPGR KYKDYFNFSH PLISSNLVQE DCAWLSGMNV FDLKAWRQTN 180
  181 ITEAYSTWLR LSVRSGLQLW QPGALPPTLL AFKGLTQSLE PSWHVAGLGS RSVKSPQEIL 240
  241 KSASVLHFSG PAKPWLEISN PEVRSLWYRY VNSSDIFVRK CKIMN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.30103
Match: 1zcyA
Description: apo form of a mutant of glycogenin in which Asp159 is replaced by Ser
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.3567084433464 bayes_pls_golite062009
transferase activity 1.04375515050786 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle