YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|159466814, gi...
Organism:	Chlamydomonas reinhardtii
Length:	358 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|159466814, gi....

Description	E-value	Query Range	Subject Range
gi\|18398129, gi\|... - gi\|6648213\|gb\|AAF21211.1\|AC013483_35 unknown protein [Arabidopsis thaliana], gi\|24899681\|gb\|AAN65055...	411.0	[0..55]	[358..74]
gi\|186682051, gi... - gi\|23130294\|ref\|ZP_00112111.1\| hypothetical protein Npun02000393 [Nostoc punctiforme PCC 73102], gi\|...	399.0	[0..72]	[353..2]
gi\|25365178 - pir\|\|AH2416 hypothetical protein alr4888 [imported] - Nostoc sp. (strain PCC 7120) gi\|17232380, gi\|... - gi\|17232380\|ref\|NP_488928.1\| hypothetical protein alr4888 [Nostoc sp. PCC 7120], gi\|17134025\|dbj\|BAB...	398.0	[0..72]	[353..2]
gi\|82799327 - gi\|82799327\|gb\|ABB92253.1\| conserved hypothetical protein [uncultured marine type-A Synechococcus 5B...	396.0	[0..66]	[353..2]
gi\|45508221, gi\|... - gi\|75908378\|ref\|YP_322674.1\| hypothetical protein Ava_2159 [Anabaena variabilis ATCC 29413], gi\|7570...	390.0	[0..72]	[353..2]
gi\|110169149, gi... - gi\|71675975\|ref\|ZP_00673718.1\| Protein of unknown function DUF1092 [Trichodesmium erythraeum IMS101]...	389.0	[0..72]	[353..2]
gi\|72383696, gi\|... - gi\|72383696\|ref\|YP_293051.1\| hypothetical protein PMN2A_1860 [Prochlorococcus marinus str. NATL2A], ...	387.0	[0..65]	[355..2]
gi\|116075331, gi... - gi\|116075331\|ref\|ZP_01472591.1\| hypothetical protein RS9916_27264 [Synechococcus sp. RS9916], gi\|116...	384.0	[0..62]	[356..5]
gi\|84518420, gi\|... - gi\|84518420\|ref\|ZP_01005769.1\| hypothetical protein P9211_06187 [Prochlorococcus marinus str. MIT 92...	380.0	[0..66]	[355..5]
gi\|86168488, gi\|... - gi\|87123919\|ref\|ZP_01079769.1\| hypothetical protein RS9917_09926 [Synechococcus sp. RS9917], gi\|8616...	378.0	[0..55]	[356..3]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLLGNQGL GHAGRPSTSA NVKLQPRLRA IRARVQQTGR RVEHRVVFAQ AAHDTAVTQP  60
   61 STSSAAKGLP KSSVWEIDFC SRPLLDERGK KVWELLICDP ERNFEYSEYF PNSKINSAEL 120
  121 KRTIERILAQ AGAERPEKAR FFRSQMQTII TKALTDCQIK AVPSRRCFTV MSWINERLES 180
  181 VYKQDPRFSD KAQS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [195-358]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFQLDLGPPE ALPDALRGEQ WAFVQLPLGT LLQMLKRVDD AEIFGSGFTL GTVGLADLPA  60
   61 DILIPGVVVF SRRALPLAAW TNGLEIAAVK ADVARSCLIL ETGVNQRWKY GSWRPNEDSI 120
  121 GEAEGWEIAK QGVKGVHFLA VQPDPDSEEL NGLWLLQDCE PPTI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits