YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253774924, gi...
Organism:	Escherichia coli BL21(DE3)
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253774924, gi....

Description	E-value	Query Range	Subject Range
gi\|30039853, gi\|... - gi\|30061611\|ref\|NP_835782.1\| putative ferredoxin [Shigella flexneri 2a str. 2457T], gi\|30039853\|gb\|A... gi\|24050242, gi\|... - gi\|24111490\|ref\|NP_706000.1\| putative ferredoxin [Shigella flexneri 2a str. 301], gi\|24050242\|gb\|AAN... gi\|192955713, gi... - gi\|75234145\|ref\|ZP_00718549.1\| COG2440: Ferredoxin-like protein [Escherichia coli E110019], gi\|19307... gi\|157156329, gi... - gi\|75189148\|ref\|ZP_00702415.1\| COG2440: Ferredoxin-like protein [Escherichia coli E24377A], gi\|15715... gi\|209917236, gi... - gi\|209917236\|ref\|YP_002291320.1\| putative ferredoxin [Escherichia coli SE11], gi\|209910495\|dbj\|BAG75... gi\|218359397, gi... - gi\|218552629\|ref\|YP_002385542.1\| putative 4Fe-4S ferredoxin [Escherichia coli IAI1], gi\|218359397\|em... FIXX_SHIFL - Ferredoxin-like protein FixX OS=Shigella flexneri GN=fixX PE=3 SV=1 gi\|110613658, gi... - gi\|110804110\|ref\|YP_687630.1\| putative ferredoxin [Shigella flexneri 5 str. 8401], gi\|110613658\|gb\|A...	99.0	[0..1]	[95..1]
gi\|89951244, gi\|... - gi\|90021644\|ref\|YP_527471.1\| S6 modification enzyme RimK [Saccharophagus degradans 2-40], gi\|8995124...	96.0	[0..9]	[92..447]
gi\|214001262 - gi\|214001262\|ref\|ZP_03411997.1\| ferredoxin like protein FixX [Salmonella enterica subsp. enterica se... FIXX_SALTI - Ferredoxin-like protein FixX OS=Salmonella typhi GN=fixX PE=3 SV=1 gi\|213852500 - gi\|213852500\|ref\|ZP_03382032.1\| ferredoxin like protein FixX [Salmonella enterica subsp. enterica se... gi\|213650463 - gi\|213650463\|ref\|ZP_03380516.1\| ferredoxin like protein FixX [Salmonella enterica subsp. enterica se... gi\|213616010 - gi\|213616010\|ref\|ZP_03371836.1\| ferredoxin like protein FixX [Salmonella enterica subsp. enterica se... gi\|29136245, gi\|... - gi\|29140621\|ref\|NP_803963.1\| ferredoxin like protein FixX [Salmonella enterica subsp. enterica serov... gi\|16759071 - gi\|16759071\|ref\|NP_454688.1\| ferredoxin like protein FixX [Salmonella enterica subsp. enterica serov... gi\|197361287, gi... - gi\|197361287\|ref\|YP_002140922.1\| ferredoxin like protein FixX [Salmonella enterica subsp. enterica s... gi\|56412350, gi\|... - gi\|56412350\|ref\|YP_149425.1\| ferredoxin like protein FixX [Salmonella enterica subsp. enterica serov... gi\|213586023 - gi\|213586023\|ref\|ZP_03367849.1\| ferredoxin like protein FixX [Salmonella enterica subsp. enterica se... gi\|213427520 - gi\|213427520\|ref\|ZP_03360270.1\| ferredoxin like protein FixX [Salmonella enterica subsp. enterica se... gi\|213051842 - gi\|213051842\|ref\|ZP_03344720.1\| ferredoxin like protein FixX [Salmonella enterica subsp. enterica se... gi\|213024323 - gi\|213024323\|ref\|ZP_03338770.1\| ferredoxin like protein FixX [Salmonella enterica subsp. enterica se... FIXX_SALTI - Ferredoxin-like protein fixX OS=Salmonella typhi GN=fixX PE=3 SV=1	96.0	[0..1]	[95..1]
gi\|88778550, gi\|... - gi\|88798787\|ref\|ZP_01114370.1\| dehydrogenase [Reinekea sp. MED297], gi\|88778550\|gb\|EAR09742.1\| dehyd...	95.0	[0..9]	[92..452]
gi\|205351419, gi... - gi\|205351419\|ref\|YP_002225220.1\| ferredoxin like protein FixX [Salmonella enterica subsp. enterica s... gi\|204927363, gi... - gi\|204927363\|ref\|ZP_03218565.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella en... gi\|200388316, gi... - gi\|200388316\|ref\|ZP_03214928.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella en... gi\|238911137 - gi\|238911137\|ref\|ZP_04654974.1\| ferredoxin like protein FixX [Salmonella enterica subsp. enterica se... gi\|237729340, gi... - gi\|237729340\|ref\|ZP_04559821.1\| ferredoxin-like protein fixX [Citrobacter sp. 30_2], gi\|226909069\|gb... FIXX_SALTY - Ferredoxin-like protein fixX OS=Salmonella typhimurium GN=fixX PE=3 SV=1 gi\|194457687, gi... - gi\|194471323\|ref\|ZP_03077307.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella en... gi\|194408042, gi... - gi\|194449738\|ref\|YP_002044046.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella e... gi\|194445342, gi... - gi\|194445342\|ref\|YP_002039309.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella e... gi\|205342467, gi... - gi\|205342467\|gb\|EDZ29231.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella enteri... gi\|197940599, gi... - gi\|198246083\|ref\|YP_002214033.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella e... FIXX_SALTY - Ferredoxin-like protein fixX OS=Salmonella typhimurium GN=fixX PE=3 SV=1 gi\|197265959, gi... - gi\|197265959\|ref\|ZP_03166033.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella en... gi\|197250583, gi... - gi\|197250583\|ref\|YP_002145062.1\| ferredoxin-like protein ydiT [Salmonella enterica subsp. enterica s... gi\|194734964, gi... - gi\|194734964\|ref\|YP_002113094.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella e... gi\|205335114, gi... - gi\|205335114\|gb\|EDZ21878.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella enteri... lcl\|NC_016856.1_... - [gene=fixX] [protein=putative ferredoxin] [protein_id=YP_005235726.1] [location=92456..92743] gi\|167989938, gi... - gi\|205331571\|gb\|EDZ18335.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella enteri... FIXX_SALTY - Ferredoxin-like protein FixX OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fixX... gi\|167550743, gi... - gi\|205324316\|gb\|EDZ12155.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella enteri... gi\|195632946, gi... - gi\|195632946\|gb\|EDX51400.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella enteri... gi\|168262248, gi... - gi\|205348765\|gb\|EDZ35396.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella enteri... gi\|205337434, gi... - gi\|205337434\|gb\|EDZ24198.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella enteri... gi\|197292031, gi... - gi\|197292031\|gb\|EDY31381.1\| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salmonella enteri...	95.0	[0..1]	[95..1]
gi\|85714247, gi\|... - gi\|85714247\|ref\|ZP_01045235.1\| FAD dependent oxidoreductase [Nitrobacter sp. Nb-311A], gi\|85698694\|g...	94.0	[0..9]	[92..455]
gi\|75676779, gi\|... - gi\|75676779\|ref\|YP_319200.1\| FAD dependent oxidoreductase [Nitrobacter winogradskyi Nb-255], gi\|7442...	94.0	[0..9]	[92..455]
gi\|114332562, gi... - gi\|69951947\|ref\|ZP_00639559.1\| Electron-transferring-flavoprotein dehydrogenase [Shewanella frigidim...	94.0	[0..9]	[92..451]
gi\|83646662, gi\|... - gi\|83646662\|ref\|YP_435097.1\| dehydrogenase [Hahella chejuensis KCTC 2396], gi\|83634705\|gb\|ABC30672.1...	94.0	[0..9]	[92..453]
gi\|62126276, gi\|... - gi\|62178643\|ref\|YP_215060.1\| putative ferredoxin, carnitine metabolism [Salmonella enterica subsp. e...	94.0	[0..1]	[95..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSPVNVDVK LGVNKFNVDE EHPHIVVKAD ADKQALELLV KACPAGLYKK QDDGSVRFDY  60
   61 AGCLECGTCR ILGLGSALEQ WEYPRGTFGV EFRYG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	2gmhA
Description:	No description for 2gmhA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits