YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229700359, gi...
Organism:	Yersinia pestis Pestoides A
Length:	335 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229700359, gi....

Description	E-value	Query Range	Subject Range
gi\|238715532, gi... - gi\|77956490\|ref\|ZP_00820584.1\| COG0078: Ornithine carbamoyltransferase [Yersinia bercovieri ATCC 439...	0.0	[1..334]	[7..340]
OTC_YERP3 - Ornithine carbamoyltransferase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=arg...	0.0	[1..335]	[1..335]
gi\|238727655, gi... - gi\|77978585\|ref\|ZP_00834012.1\| COG0078: Ornithine carbamoyltransferase [Yersinia intermedia ATCC 299...	0.0	[1..334]	[1..334]
gi\|186893888, gi... - gi\|186893888\|ref\|YP_001871000.1\| ornithine carbamoyltransferase subunit I [Yersinia pseudotuberculos... OTC_YERPS - Ornithine carbamoyltransferase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=argI PE... OTC_YERPS - Ornithine carbamoyltransferase OS=Yersinia pseudotuberculosis GN=argI PE=3 SV=1	0.0	[1..335]	[1..335]
gi\|77960004 - gi\|77960004\|ref\|ZP_00823908.1\| COG0078: Ornithine carbamoyltransferase [Yersinia mollaretii ATCC 439...	0.0	[1..332]	[7..338]
gi\|117626598, gi... - gi\|117626598\|ref\|YP_859921.1\| ornithine carbamoyltransferase 1 [Escherichia coli APEC O1], gi\|115515...	0.0	[1..334]	[69..402]
gi\|83586721, gi\|... - gi\|83586721\|ref\|ZP_00925353.1\| COG0078: Ornithine carbamoyltransferase [Escherichia coli 101-1], gi\|...	0.0	[1..335]	[1..335]
OTC_ECO24 - Ornithine carbamoyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=argI PE=3 SV=...	0.0	[1..335]	[1..335]
gi\|91213809, gi\|... - gi\|91213809\|ref\|YP_543795.1\| ornithine carbamoyltransferase subunit F [Escherichia coli UTI89], gi\|9... gi\|218702957, gi... - gi\|218702957\|ref\|YP_002410586.1\| ornithine carbamoyltransferase subunit F [Escherichia coli IAI39], ... gi\|191170815, gi... - gi\|75242361\|ref\|ZP_00726123.1\| COG0078: Ornithine carbamoyltransferase [Escherichia coli F11], gi\|19... gi\|227886692, gi... - gi\|227886692\|ref\|ZP_04004497.1\| ornithine carbamoyltransferase 1 [Escherichia coli 83972], gi\|227836... gi\|237703929, gi... - gi\|237703929\|ref\|ZP_04534410.1\| ornithine carbamoyltransferase subunit F [Escherichia sp. 3_2_53FAA]... OTC_ECOL6 - Ornithine carbamoyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=arg... OTC_ECOL6 - Ornithine carbamoyltransferase OS=Escherichia coli O6 GN=argI PE=3 SV=3	0.0	[1..334]	[1..334]
OTC_ECO57 - Ornithine carbamoyltransferase OS=Escherichia coli O157:H7 GN=argI PE=3 SV=3 gi\|25286273, gi\|... - pir\|\|A86124 ornithine carbamoyltransferase 1 [imported] - Escherichia coli (strain O157:H7, substrai... gi\|15804846, gi\|... - gi\|15804846\|ref\|NP_290887.1\| ornithine carbamoyltransferase subunit I [Escherichia coli O157:H7 EDL9... gi\|208739534, gi... - gi\|208819411\|ref\|ZP_03259731.1\| ornithine carbamoyltransferase [Escherichia coli O157:H7 str. EC4042... gi\|209398427, gi... - gi\|209398427\|ref\|YP_002273798.1\| ornithine carbamoyltransferase [Escherichia coli O157:H7 str. EC411... gi\|217326119, gi... - gi\|217326119\|ref\|ZP_03442203.1\| ornithine carbamoyltransferase [Escherichia coli O157:H7 str. TW1458... gi\|189379487, gi... - gi\|189379487\|gb\|EDU97903.1\| ornithine carbamoyltransferase [Escherichia coli O157:H7 str. EC508], gi... gi\|195937279 - gi\|195937279\|ref\|ZP_03082661.1\| ornithine carbamoyltransferase subunit I [Escherichia coli O157:H7 s... gi\|208725707, gi... - gi\|208805906\|ref\|ZP_03248243.1\| ornithine carbamoyltransferase [Escherichia coli O157:H7 str. EC4206... gi\|208733293, gi... - gi\|208812016\|ref\|ZP_03253345.1\| ornithine carbamoyltransferase [Escherichia coli O157:H7 str. EC4045... gi\|189363939, gi... - gi\|189363939\|gb\|EDU82358.1\| ornithine carbamoyltransferase [Escherichia coli O157:H7 str. EC4486], g... gi\|168774026, gi... - gi\|187770253\|gb\|EDU34097.1\| ornithine carbamoyltransferase [Escherichia coli O157:H7 str. EC4196], g... gi\|168782779, gi... - gi\|188999816\|gb\|EDU68802.1\| ornithine carbamoyltransferase [Escherichia coli O157:H7 str. EC4076], g... gi\|189375038, gi... - gi\|189375038\|gb\|EDU93454.1\| ornithine carbamoyltransferase [Escherichia coli O157:H7 str. EC869], gi... gi\|188014845, gi... - gi\|188014845\|gb\|EDU52967.1\| ornithine carbamoyltransferase [Escherichia coli O157:H7 str. EC4113], g... gi\|168754834, gi... - gi\|189357876\|gb\|EDU76295.1\| ornithine carbamoyltransferase [Escherichia coli O157:H7 str. EC4401], g... gi\|13364709, gi\|... - gi\|15834485\|ref\|NP_313258.1\| ornithine carbamoyltransferase subunit I [Escherichia coli O157:H7 str.... gi\|168760507, gi... - gi\|189368978\|gb\|EDU87394.1\| ornithine carbamoyltransferase [Escherichia coli O157:H7 str. EC4501], g... gi\|254796274, gi... - gi\|254796274\|ref\|YP_003081111.1\| ornithine carbamoyltransferase 1 [Escherichia coli O157:H7 str. TW1...	0.0	[1..334]	[1..334]

Back

Predicted Domain #1

Region A:
Residues: [1-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQFYKRHFL RLLDFTPAEI IALLDLATEL KKDKKSGCEQ QKLVGKNIAL IFEKDSTRTR  60
   61 CSFEVAAYDQ GARVTYLGPG GSQIGHKESI KDTARVLGRM YDGIQYRGYG QRVVETLAEF 120
  121 AGVPVWNGLT DEFHPTQLLA DLLTMREHLP NKSLNKMTLA YLGDTRNNMG NSLLEAAALV 180
  181 GMDLRLVAPK ACWPEEAFVI SCQALAQKTG GKITLTEDIA EGVNGADFLY TDVWVSMGEP 240
  241 KEVWQERINL LKPYQVNMRV LTLTGNPQVK FLHCLPAFHD DQTTIGKQMA EQYDLPGGME 300
  301 VTEEVFESAH SIVFDQAENR LHTIKAVMVA TMSKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	126.0
Match:	1akmA
Description:	Ornithine transcarbamoylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ornithine carbamoyltransferase activity	6.08861672645671	bayes_pls_golite062009
carboxyl- or carbamoyltransferase activity	5.32518877756022	bayes_pls_golite062009
aspartate carbamoyltransferase activity	3.84118892938517	bayes_pls_golite062009
transferase activity	2.2887439598954	bayes_pls_golite062009
carbamoyl-phosphate synthase activity	2.21516900257798	bayes_pls_golite062009
carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	2.19154218663721	bayes_pls_golite062009
catalytic activity	2.06069688716378	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.54712264845123	bayes_pls_golite062009
binding	1.00470116390248	bayes_pls_golite062009
dihydroorotase activity	0.585784960037124	bayes_pls_golite062009
protein binding	0.171217252293449	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: