YRC Public Data Repository - Protein Structure Prediction

Protein:	PIGP_PONPY
Organism:	Pongo pygmaeus
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIGP_PONPY.

Description	E-value	Query Range	Subject Range
gi\|109065378 - gi\|109065378\|ref\|XP_001084945.1\| PREDICTED: similar to phosphatidylinositol N-acetylglucosaminyltran...	229.0	[0..1]	[134..429]
gi\|74001439 - gi\|74001439\|ref\|XP_535591.2\| PREDICTED: similar to phosphatidylinositol N-acetylglucosaminyltransfer...	221.0	[0..1]	[134..118]
PIGP - phosphatidylinositol glycan anchor biosynthesis, class P	199.0	[0..1]	[134..25]
gi\|30584449, gi\|... - gi\|60653415\|gb\|AAX29402.1\| Down syndrome critical region gene 5 [synthetic construct], gi\|30584449\|g...	195.0	[0..1]	[134..1]
gi\|55729151 - gi\|55729151\|emb\|CAH91312.1\| hypothetical protein [Pongo abelii] gi\|197099901 - gi\|197099901\|ref\|NP_001127401.1\| phosphatidylinositol glycan anchor biosynthesis, class P [Pongo abe...	194.0	[0..1]	[134..1]
PIGP_MOUSE - Phosphatidylinositol N-acetylglucosaminyltransferase subunit P OS=Mus musculus GN=Pigp PE=2 SV=1	191.0	[0..1]	[132..1]
gi\|153792709, gi... - gi\|27669812\|ref\|XP_213650.1\| PREDICTED: similar to Down syndrome critical region protein c [Rattus n...	190.0	[0..1]	[132..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVENSPSPLP ERAIYGFVLF LSSQFGFILY LVWAFIPESW LNSLGLTYWP QKYWAVALPV  60
   61 YLLIAIVIGY VLLFGINMMS TSPLDSIHTI TDNYARNQRQ KKYQEEAIPA LRDISISEVN 120
  121 QMFFLAAKEL YTEN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	65.420216
Match:	PF08510.3
Description:	No description for PF08510.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.864	N/A	N/A	a.29.13	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits