YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229894743, gi...
Organism:	Yersinia pestis Pestoides A
Length:	245 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229894743, gi....

Description	E-value	Query Range	Subject Range
gi\|21959124, gi\|... - gi\|22126161\|ref\|NP_669584.1\| putative hydrolase [Yersinia pestis KIM], gi\|21959124\|gb\|AAM85835.1\|AE0...	2.0E-52	[1..245]	[38..282]
Y2446_YERPG - Probable phosphatase YpAngola_A2446 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A2446...	1.0E-50	[1..245]	[1..245]
Y2529_PECAS - Probable phosphatase ECA2529 OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=ECA... Y2529_ERWCT - Probable phosphatase ECA2529 OS=Erwinia carotovora subsp. atroseptica GN=ECA2529 PE=3 SV=1	1.0E-50	[1..245]	[1..245]
gi\|213646860 - gi\|213646860\|ref\|ZP_03376913.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typh... gi\|214002386 - gi\|214002386\|ref\|ZP_03413121.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typh... YCDX_SALPC - Probable phosphatase YcdX OS=Salmonella paratyphi C (strain RKS4594) GN=ycdX PE=3 SV=1 YCDX_SALTY - Putative hydrolase ycdX OS=Salmonella typhimurium GN=ycdX PE=3 SV=1 YCDX_SALPA - Probable phosphatase YcdX OS=Salmonella paratyphi A GN=ycdX PE=3 SV=1 YCDX_SALTI - Putative hydrolase ycdX OS=Salmonella typhi GN=ycdX PE=3 SV=1 YCDX_SALCH - Putative hydrolase ycdX OS=Salmonella choleraesuis GN=ycdX PE=3 SV=1 gi\|16760013 - gi\|16760013\|ref\|NP_455630.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typhi s... YCDX_SALTY - Probable phosphatase YcdX OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ycdX PE... gi\|29142216, gi\|... - gi\|29142216\|ref\|NP_805558.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typhi s... YCDX_SALPB - Putative hydrolase ycdX OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ycdX PE=3 SV=1 YCDX_SALCH - Probable phosphatase YcdX OS=Salmonella choleraesuis (strain SC-B67) GN=ycdX PE=3 SV=1 YCDX_SALPA - Probable phosphatase YcdX OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=ycdX PE=3 SV=1 gi\|213162407 - gi\|213162407\|ref\|ZP_03348117.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typh... gi\|213417540 - gi\|213417540\|ref\|ZP_03350682.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typh... gi\|213427743 - gi\|213427743\|ref\|ZP_03360493.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typh... YCDX_SALPB - Probable phosphatase YcdX OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=ycdX PE=3 SV=1 gi\|213581804 - gi\|213581804\|ref\|ZP_03363630.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Typh... YCDX_SALPK - Probable phosphatase YcdX OS=Salmonella paratyphi A (strain AKU_12601) GN=ycdX PE=3 SV=1 YCDX_SALTY - Probable phosphatase YcdX OS=Salmonella typhimurium GN=ycdX PE=3 SV=1 YCDX_SALDC - Probable phosphatase YcdX OS=Salmonella dublin (strain CT_02021853) GN=ycdX PE=3 SV=1 YCDX_SALCH - Probable phosphatase YcdX OS=Salmonella choleraesuis GN=ycdX PE=3 SV=1 gi\|200390492, gi... - gi\|200390492\|ref\|ZP_03217103.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Virc... YCDX_SALEP - Probable phosphatase YcdX OS=Salmonella enteritidis PT4 (strain P125109) GN=ycdX PE=3 SV=1 YCDX_SALNS - Probable phosphatase YcdX OS=Salmonella newport (strain SL254) GN=ycdX PE=3 SV=1 gi\|194469683, gi... - gi\|194469683\|ref\|ZP_03075667.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Kent... YCDX_SALA4 - Probable phosphatase YcdX OS=Salmonella agona (strain SL483) GN=ycdX PE=3 SV=1 gi\|197263823, gi... - gi\|197263823\|ref\|ZP_03163897.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Sain... gi\|205322436, gi... - gi\|205322436\|gb\|EDZ10275.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Saintpau... YCDX_SALTI - Probable phosphatase YcdX OS=Salmonella typhi GN=ycdX PE=3 SV=1 gi\|205328027, gi... - gi\|205328027\|gb\|EDZ14791.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar 4,[5],12... lcl\|NC_016856.1_... - [gene=ycdX] [protein=putative hydrolase] [protein_id=YP_005236884.1] [location=1184250..1184987] gi\|205331923, gi... - gi\|205331923\|gb\|EDZ18687.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Kentucky... gi\|205347350, gi... - gi\|205347350\|gb\|EDZ33981.1\| putative hydrolase [Salmonella enterica subsp. enterica serovar Hadar st...	2.0E-50	[1..245]	[1..245]
gi\|238715871, gi... - gi\|77959370\|ref\|ZP_00823390.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	5.0E-50	[1..245]	[1..245]
gi\|238728195, gi... - gi\|77979768\|ref\|ZP_00835184.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	5.0E-50	[1..245]	[1..245]
gi\|238797838, gi... - gi\|77959912\|ref\|ZP_00823832.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	6.0E-50	[1..245]	[1..245]
EG13870 - alkaline phosphatase / Alkaline phosphatase; required for swarming phenotype; chaperoned by YcdY YCDX_ECOLI - Putative hydrolase ycdX (EC 3.1.-.-) - Escherichia coli YCDX_ECOBW - Probable phosphatase YcdX OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=ycdX PE=3 SV=1 gi\|89107879, gi\|... - gi\|89107879\|ref\|AP_001659.1\| predicted zinc-binding hydrolase [Escherichia coli str. K-12 substr. W3... YCDX_ECODH - Probable phosphatase YcdX OS=Escherichia coli (strain K12 / DH10B) GN=ycdX PE=3 SV=1 EG13870 - alkaline phosphatase / Alkaline phosphatase; required for swarming phenotype; chaperoned by YcdY	1.0E-49	[1..245]	[1..245]
gi\|77973508, gi\|... - gi\|77973508\|ref\|ZP_00829055.1\| COG1387: Histidinol phosphatase and related hydrolases of the PHP fam...	2.0E-49	[1..245]	[1..245]
gi\|90310136, gi\|... - gi\|90408756\|ref\|ZP_01216902.1\| hypothetical protein PCNPT3_08415 [Psychromonas sp. CNPT3], gi\|903101...	6.0E-49	[1..245]	[1..246]

Back

Predicted Domain #1

Region A:
Residues: [1-245]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPVDLHMHT VASTHAYSTL HDYIAEAKLK NIKLFAITDH GPDMADAPHY WHFMNMRVWP  60
   61 RLVDGVGILR GIEANIKNLD GDIDCTGPML DAVDLLIAGF HEPVFPPQDK AANTQAMIAT 120
  121 MAQGNVHIIS HPGNPKYPVD IPAIAQAAAK YNVALELNNS SFAHSRKGSE ANCRAIAAAV 180
  181 RDAGGWLALG SDSHIAYALG IFEHCERIIA EVNFPQERIL NVSPRRLLDY LEQRGRPAIP 240
  241 ELAEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.09691
Match:	1m65A
Description:	Hypothetical protein YcdX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits