YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238901007, gi...
Organism:	Escherichia coli BW2952
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238901007, gi....

Description	E-value	Query Range	Subject Range
gi\|194421424, gi... - gi\|83584977\|ref\|ZP_00923632.1\| COG3042: Putative hemolysin [Escherichia coli 101-1], gi\|194439603\|re... gi\|253977946, gi... - gi\|254288639\|ref\|YP_003054387.1\| conserved outer membrane protein [Escherichia coli BL21(DE3)], gi\|2... gi\|251785240, gi... - gi\|251785240\|ref\|YP_002999544.1\| hypothetical protein B21_01750 [Escherichia coli BL21], gi\|24237751... gi\|81245220, gi\|... - gi\|82543809\|ref\|YP_407756.1\| hypothetical protein SBO_1300 [Shigella boydii Sb227], gi\|81245220\|gb\|A... gi\|253973752, gi... - gi\|254161851\|ref\|YP_003044959.1\| conserved outer membrane protein [Escherichia coli B str. REL606], ... gi\|75177282, gi\|... - gi\|75177282\|ref\|ZP_00697371.1\| COG3042: Putative hemolysin [Shigella boydii BS512], gi\|187731316\|ref... gi\|75513711, gi\|... - gi\|75513711\|ref\|ZP_00736087.1\| COG3042: Putative hemolysin [Escherichia coli 53638], gi\|188493617\|re...	124.0	[0..1]	[84..1]
gi\|81241102, gi\|... - gi\|82776954\|ref\|YP_403303.1\| hypothetical protein SDY_1691 [Shigella dysenteriae Sd197], gi\|81241102...	123.0	[0..1]	[84..1]
gi\|194433462, gi... - gi\|83569597\|ref\|ZP_00921048.1\| COG3042: Putative hemolysin [Shigella dysenteriae 1012], gi\|194433462...	122.0	[0..1]	[84..1]
gi\|75190822, gi\|... - gi\|75190822\|ref\|ZP_00704089.1\| COG3042: Putative hemolysin [Escherichia coli E24377A], gi\|157156904\|... gi\|218554361, gi... - gi\|218554361\|ref\|YP_002387274.1\| conserved hypothetical protein; putative outer membrane protein [Es...	122.0	[0..1]	[84..1]
gi\|75255312, gi\|... - gi\|75255312\|ref\|ZP_00727145.1\| COG3042: Putative hemolysin [Escherichia coli E22], gi\|193066589\|ref\|... gi\|75208200, gi\|... - gi\|75208200\|ref\|ZP_00708572.1\| COG3042: Putative hemolysin [Escherichia coli B171], gi\|194430493\|ref...	122.0	[0..1]	[84..1]
gi\|74311895, gi\|... - gi\|74311895\|ref\|YP_310314.1\| hypothetical protein SSON_1368 [Shigella sonnei Ss046], gi\|73855372\|gb\|...	122.0	[0..1]	[84..1]
gi\|188016268, gi... - gi\|188016268\|gb\|EDU54390.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4113], gi\|16874937... gi\|187769371, gi... - gi\|187769371\|gb\|EDU33215.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4196], gi\|16877489... gi\|168770763, gi... - gi\|189360336\|gb\|EDU78755.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4486], gi\|16877076... gi\|189365709, gi... - gi\|189365709\|gb\|EDU84125.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4501], gi\|16876426... gi\|189355009, gi... - gi\|189355009\|gb\|EDU73428.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4401], gi\|16875810... gi\|15831756, gi\|... - gi\|15831756\|ref\|NP_310529.1\| hypothetical protein ECs2502 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|25496391, gi\|... - pir\|\|B85790 hypothetical protein yoaF [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12515830, gi\|... - gi\|15802207\|ref\|NP_288229.1\| hypothetical protein Z2835 [Escherichia coli O157:H7 EDL933], gi\|125158... gi\|15831756, gi\|... - gi\|15831756\|ref\|NP_310529.1\| hypothetical protein ECs2502 [Escherichia coli O157:H7], gi\|13361969\|db... gi\|217328677, gi... - gi\|217328677\|ref\|ZP_03444758.1\| putative lipoprotein [Escherichia coli O157:H7 str. TW14588], gi\|217... gi\|195937481 - gi\|195937481\|ref\|ZP_03082863.1\| hypothetical protein EscherichcoliO157_13697 [Escherichia coli O157:... gi\|189376752, gi... - gi\|189376752\|gb\|EDU95168.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC508], gi\|168801046... gi\|189371933, gi... - gi\|189371933\|gb\|EDU90349.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC869], gi\|168788203... gi\|189000253, gi... - gi\|189000253\|gb\|EDU69239.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4076], gi\|16878222... gi\|209398179, gi... - gi\|209398179\|ref\|YP_002270868.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4115], gi\|209... gi\|208741278, gi... - gi\|208821155\|ref\|ZP_03261475.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4042], gi\|2087... gi\|208731144, gi... - gi\|208816801\|ref\|ZP_03257921.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4045], gi\|2087... gi\|208724936, gi... - gi\|208810420\|ref\|ZP_03252296.1\| putative lipoprotein [Escherichia coli O157:H7 str. EC4206], gi\|2087... gi\|254592815, gi... - gi\|254793415\|ref\|YP_003078252.1\| conserved outer membrane protein [Escherichia coli O157:H7 str. TW1...	122.0	[0..1]	[84..1]
gi\|16502913, gi\|... - gi\|25512483\|pir\|\|AE0713 conserved hypothetical protein STY1843 [imported] - Salmonella enterica subs... gi\|29141624, gi\|... - gi\|29141624\|ref\|NP_804966.1\| hypothetical protein t1155 [Salmonella enterica subsp. enterica serovar... gi\|214000489 - gi\|214000489\|ref\|ZP_03411224.1\| hypothetical protein Salmonellentericaenterica_07626 [Salmonella ent... gi\|16760617 - gi\|16760617\|ref\|NP_456234.1\| hypothetical protein STY1843 [Salmonella enterica subsp. enterica serov... gi\|213609140 - gi\|213609140\|ref\|ZP_03368966.1\| hypothetical protein SentesTyp_00778 [Salmonella enterica subsp. ent... gi\|213646203 - gi\|213646203\|ref\|ZP_03376256.1\| hypothetical protein SentesTy_01920 [Salmonella enterica subsp. ente... gi\|213850189 - gi\|213850189\|ref\|ZP_03381087.1\| hypothetical protein SentesT_00793 [Salmonella enterica subsp. enter... gi\|213976843 - gi\|213976843\|ref\|ZP_03404102.1\| hypothetical protein Salmonellaentericaenterica_20877 [Salmonella en... gi\|205272779, gi... - gi\|205352998\|ref\|YP_002226799.1\| exported protein [Salmonella enterica subsp. enterica serovar Galli... gi\|207857223, gi... - gi\|207857223\|ref\|YP_002243874.1\| hypothetical protein SEN1776 [Salmonella enterica subsp. enterica s... gi\|213161192 - gi\|213161192\|ref\|ZP_03346902.1\| hypothetical protein Salmoneentericaenterica_14615 [Salmonella enter... gi\|213427962 - gi\|213427962\|ref\|ZP_03360712.1\| hypothetical protein SentesTyphi_21700 [Salmonella enterica subsp. e... gi\|168463339, gi... - gi\|195633842\|gb\|EDX52194.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|198244944, gi... - gi\|198244944\|ref\|YP_002215861.1\| hypothetical protein SeD_A2083 [Salmonella enterica subsp. enterica...	114.0	[0..1]	[84..1]
gi\|56127995, gi\|... - gi\|56413738\|ref\|YP_150813.1\| hypothetical protein SPA1569 [Salmonella enterica subsp. enterica serov... gi\|197362660, gi... - gi\|197362660\|ref\|YP_002142297.1\| hypothetical protein SSPA1458 [Salmonella enterica subsp. enterica ...	114.0	[0..1]	[84..1]
lcl\|NC_016856.1_... - [gene=yaoF] [protein=putative hemolysin] [protein_id=YP_005237117.1] [location=1363795..1364046] gi\|204322814, gi... - gi\|204927472\|ref\|ZP_03218673.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Javi... gi\|197263552, gi... - gi\|197263552\|ref\|ZP_03163626.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Sain... gi\|238910909 - gi\|238910909\|ref\|ZP_04654746.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Tenn... gi\|16764626, gi\|... - gi\|16764626\|ref\|NP_460241.1\| putative hemolysin [Salmonella typhimurium LT2], gi\|16419791\|gb\|AAL2020... gi\|200390096, gi... - gi\|200390096\|ref\|ZP_03216707.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Virc... gi\|194735682, gi... - gi\|194735682\|ref\|YP_002114291.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Sch... gi\|197248100, gi... - gi\|197248100\|ref\|YP_002146766.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Ago... gi\|194447950, gi... - gi\|194447950\|ref\|YP_002045280.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Hei... gi\|194469569, gi... - gi\|194469569\|ref\|ZP_03075553.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Kent... gi\|205347297, gi... - gi\|205347297\|gb\|EDZ33928.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Hadar st... gi\|194446266, gi... - gi\|194446266\|ref\|YP_002040530.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar New... gi\|168238932, gi... - gi\|197288268\|gb\|EDY27653.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Schwarze... gi\|168244371, gi... - gi\|205336720\|gb\|EDZ23484.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Heidelbe... gi\|205329695, gi... - gi\|205329695\|gb\|EDZ16459.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar 4,[5],12... gi\|205332655, gi... - gi\|205332655\|gb\|EDZ19419.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Kentucky... gi\|205322958, gi... - gi\|205322958\|gb\|EDZ10797.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Saintpau... gi\|62127489, gi\|... - gi\|62179856\|ref\|YP_216273.1\| putative hemolysin [Salmonella enterica subsp. enterica serovar Cholera...	114.0	[0..1]	[84..1]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIISFVLPC LLVLAGCSTP SQPEAPKPPQ IGMANPASVY CQQKGGTLIP VQTAQGVSNN  60
   61 CKLPGGETID EWALWRRDHP AGEK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	45.657577
Match:	PF03891.6
Description:	No description for PF03891.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits