YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229837946, gi...
Organism:	Yersinia pestis biovar Orientalis str. PEXU2
Length:	327 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229837946, gi....

Description	E-value	Query Range	Subject Range
ARNC_YERPB - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Yersinia pseudotuberculosis se... ARNC_YERPY - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Yersinia pseudotuberculosis se... ARNC_YERPP - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Yersinia pestis (strain Pestoi... ARNC_YERPS - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Yersinia pseudotuberculosis se... ARNC_YERPS - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Yersinia pseudotuberculosis GN...	1.0E-62	[1..327]	[1..327]
gi\|77962216 - gi\|77962216\|ref\|ZP_00826039.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Yersi...	5.0E-61	[1..327]	[1..327]
gi\|77975263 - gi\|77975263\|ref\|ZP_00830799.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Yersi...	3.0E-60	[1..327]	[1..327]
gi\|77980156 - gi\|77980156\|ref\|ZP_00835571.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Yersi...	6.0E-60	[1..327]	[1..327]
gi\|77959225 - gi\|77959225\|ref\|ZP_00823247.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Yersi...	3.0E-58	[1..327]	[1..327]
ARNC_PSEPF - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Pseudomonas fluorescens (strai...	2.0E-57	[10..315]	[9..314]
ARNC_SALPK - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Salmonella paratyphi A (strain... ARNC_SALPA - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Salmonella paratyphi A (strain... ARNC_SALPA - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Salmonella paratyphi A GN=arnC...	4.0E-57	[1..327]	[1..327]
gi\|75243069, gi\|... - gi\|75243069\|ref\|ZP_00726775.1\| COG0463: Glycosyltransferases involved in cell wall biogenesis [Esche... ARNC_ECOL5 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O6:K15:H31 (s... ARNC_ECOK1 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O1:K1 / APEC ... ARNC_ECOUT - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli (strain UTI89... gi\|227835663, gi... - gi\|227887313\|ref\|ZP_04005118.1\| glycosyltransferase [Escherichia coli 83972], gi\|227835663\|gb\|EEJ461... ARNC_ECOL6 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O6:H1 (strain... gi\|226901098, gi... - gi\|237704732\|ref\|ZP_04535213.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... ARNC_ECO45 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O45:K1 (strai... ARNC_ECOL6 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O6 GN=arnC PE... ARNC_ECO81 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O81 (strain E...	4.0E-57	[1..322]	[1..322]
ARNC_PSEF5 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Pseudomonas fluorescens (strai...	5.0E-57	[10..315]	[9..314]
gi\|209765366, gi... - pir\|\|E85865 probable sugar transferase Z3512 [imported] - Escherichia coli (strain O157:H7, substrai... gi\|208738905, gi... - gi\|208818782\|ref\|ZP_03259102.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... gi\|254794149, gi... - gi\|254794149\|ref\|YP_003078986.1\| Undecaprenyl-phosphate 4-amino-4-deoxy-L-arabinose transferase [Esc... gi\|208814420, gi... - gi\|208814420\|ref\|ZP_03255749.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... gi\|12516600, gi\|... - gi\|15802803\|ref\|NP_288830.1\| undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esc... gi\|208728519, gi... - gi\|208808718\|ref\|ZP_03251055.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... ARNC_ECO57 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O157:H7 GN=ar... gi\|195935633 - gi\|195935633\|ref\|ZP_03081015.1\| undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase [... gi\|217327398, gi... - gi\|217327398\|ref\|ZP_03443481.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [... ARNC_ECO5E - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Escherichia coli O157:H7 (stra... gi\|189362984, gi... - gi\|189362984\|gb\|EDU81403.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|189368273, gi... - gi\|189368273\|gb\|EDU86689.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|189357690, gi... - gi\|189357690\|gb\|EDU76109.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|168749665, gi... - gi\|188016122\|gb\|EDU54244.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|189378876, gi... - gi\|189378876\|gb\|EDU97292.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|168787164, gi... - gi\|189372799\|gb\|EDU91215.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|189001895, gi... - gi\|189001895\|gb\|EDU70881.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|168773018, gi... - gi\|187771016\|gb\|EDU34860.1\| undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esch... gi\|15832396, gi\|... - gi\|15832396\|ref\|NP_311169.1\| undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase [Esc...	5.0E-57	[1..322]	[1..322]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLNEPIKKV SIVIPVYNEQ ESLPALIDRT TAACKLLTQA YEIILVDDGS SDNSTELLTA  60
   61 AANDPDSHII AILLNRNYGQ HSAIMAGFNQ VSGDLIITLD ADLQNPPEET PRLVHVAEEG 120
  121 YDVVGTVRAN RQDSLFRKTA SRMINMMIQR ATGKSMGDYG CMLRAYRRHI VEAMLHCHER 180
  181 STFIPILANT FARRTTEITV HHAEREFGNS KYSLMRLINL MYDLITCLTT T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1xhbA
Description:	The Crystal Structure of UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase-T1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
mannosyltransferase activity	3.87594044828967	bayes_pls_golite062009
uridylyltransferase activity	2.78377598963895	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	2.70047942699289	bayes_pls_golite062009
UTP:glucose-1-phosphate uridylyltransferase activity	2.67542562955569	bayes_pls_golite062009
transferase activity	2.62166586999833	bayes_pls_golite062009
UDP-glycosyltransferase activity	2.33861720107822	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	2.01768771829228	bayes_pls_golite062009
nucleotidyltransferase activity	2.00651267140641	bayes_pls_golite062009
UTP-monosaccharide-1-phosphate uridylyltransferase activity	1.90086040617591	bayes_pls_golite062009
catalytic activity	1.88676710996045	bayes_pls_golite062009
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	1.60323537823461	bayes_pls_golite062009
alpha-1,2-mannosyltransferase activity	1.53617752123292	bayes_pls_golite062009
acetylgalactosaminyltransferase activity	1.33788133706753	bayes_pls_golite062009
polypeptide N-acetylgalactosaminyltransferase activity	1.10309252319727	bayes_pls_golite062009
cytidylyltransferase activity	0.983416157001861	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.897978517422275	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.79629851874184	bayes_pls_golite062009
UDP-N-acetylglucosamine diphosphorylase activity	0.412018910498896	bayes_pls_golite062009
glucuronosyltransferase activity	0.287421645469793	bayes_pls_golite062009
mannose-phosphate guanylyltransferase activity	0.2363835251362	bayes_pls_golite062009
binding	0.074398891333042	bayes_pls_golite062009
acetylglucosaminyltransferase activity	0.0562130308868509	bayes_pls_golite062009
guanylyltransferase activity	0.0539392112504681	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [232-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLRLLSLVGS AIALLGFTFS VLLVALRLIF GPEWAGGGVF TLFAVLFMFI GAQFVGMGLL  60
   61 GEYIGRIYND VRARPRYFVQ KVVGAEQTEN NQDVEK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: