YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254725542
Organism:	Bacillus anthracis str. A1055
Length:	473 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254725542.

Description	E-value	Query Range	Subject Range
gi\|152023392, gi... - gi\|89201716\|ref\|ZP_01180452.1\| Protoporphyrinogen oxidase [Bacillus cereus subsp. cytotoxis NVH 391-...	4.0E-82	[1..473]	[1..473]
gi\|42736163, gi\|... - gi\|42780244\|ref\|NP_977491.1\| protoporphyrinogen oxidase [Bacillus cereus ATCC 10987], gi\|42736163\|gb...	1.0E-81	[1..473]	[1..473]
gi\|163861184, gi... - gi\|89205626\|ref\|ZP_01184194.1\| Protoporphyrinogen oxidase [Bacillus weihenstephanensis KBAB4], gi\|89...	3.0E-79	[1..472]	[1..472]
gi\|30019225, gi\|... - gi\|30019225\|ref\|NP_830856.1\| protoporphyrinogen oxidase [Bacillus cereus ATCC 14579], gi\|29894768\|gb... gi\|229126480, gi... - gi\|229126480\|ref\|ZP_04255494.1\| Protoporphyrinogen oxidase [Bacillus cereus BDRD-Cer4], gi\|228656869...	2.0E-78	[7..473]	[2..468]
gi\|47555745, gi\|... - gi\|47567550\|ref\|ZP_00238261.1\| protoporphyrinogen oxidase [Bacillus cereus G9241], gi\|47555745\|gb\|EA...	3.0E-75	[17..473]	[12..468]
gi\|47501496, gi\|... - gi\|47526348\|ref\|YP_017697.1\| protoporphyrinogen oxidase [Bacillus anthracis str. 'Ames Ancestor'], g... gi\|30254803, gi\|... - gi\|30261189\|ref\|NP_843566.1\| protoporphyrinogen oxidase [Bacillus anthracis str. Ames], gi\|30254803\|...	2.0E-72	[19..473]	[2..456]
gi\|221322374 - gi\|221322374\|ref\|ZP_03603668.1\| protoporphyrinogen oxidase [Bacillus subtilis subsp. subtilis str. S... gi\|221318099 - gi\|221318099\|ref\|ZP_03599393.1\| protoporphyrinogen oxidase [Bacillus subtilis subsp. subtilis str. J... PPOX_BACSU - Protoporphyrinogen oxidase OS=Bacillus subtilis (strain 168) GN=hemY PE=1 SV=1 gi\|221313176 - gi\|221313176\|ref\|ZP_03594981.1\| protoporphyrinogen oxidase [Bacillus subtilis subsp. subtilis str. N... PPOX_BACSU - Protoporphyrinogen oxidase OS=Bacillus subtilis GN=hemY PE=1 SV=1	1.0E-71	[2..462]	[5..468]
gi\|56379040, gi\|... - gi\|56419198\|ref\|YP_146516.1\| protoporphyrinogen oxidase [Geobacillus kaustophilus HTA426], gi\|563790...	1.0E-70	[3..466]	[6..467]
gi\|87160671\|ref\|... - protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus USA300], protoporphyrinogen oxidase ... gi\|88195653, gi\|... - gi\|88195653\|ref\|YP_500459.1\| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus NCTC 83... gi\|221142184 - gi\|221142184\|ref\|ZP_03566677.1\| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus str.... gi\|87160671, gi\|... - gi\|87160671\|ref\|YP_494464.1\| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus USA300_... gi\|221138260 - gi\|221138260\|ref\|ZP_03563062.1\| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus str.... gi\|160368855, gi... - gi\|161510046\|ref\|YP_001575705.1\| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus USA... gi\|57284806, gi\|... - gi\|57650620\|ref\|YP_186713.1\| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus COL], g...	6.0E-67	[1..462]	[1..466]
gi\|156722283, gi... - gi\|156980148\|ref\|YP_001442407.1\| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus Mu3... gi\|251814824, gi... - gi\|251814824\|ref\|ZP_04829297.1\| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus TCH7... gi\|149946817, gi... - gi\|90583060\|ref\|ZP_01238821.1\| Protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus JH1],... gi\|253315163 - gi\|253315163\|ref\|ZP_04838376.1\| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus str.... gi\|147741372, gi... - gi\|90587034\|ref\|ZP_01242713.1\| Protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus JH9],... gi\|255006620 - gi\|255006620\|ref\|ZP_05145221.2\| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus Mu50... gi\|15927406, gi\|... - gi\|15927406\|ref\|NP_374939.1\| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus N315], ... gi\|49486648, gi\|... - gi\|49486648\|ref\|YP_043869.1\| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus MSSA476... gi\|15924822, gi\|... - gi\|15924822\|ref\|NP_372356.1\| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus Mu50], ... gi\|25507631 - pir\|\|G89969 protoporphyrinogen oxidase [imported] - Staphylococcus aureus (strain N315) gi\|21283501, gi\|... - gi\|21283501\|ref\|NP_646589.1\| protoporphyrinogen oxidase [Staphylococcus aureus subsp. aureus MW2], g...	1.0E-66	[1..462]	[1..466]

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Predicted Domain #1

Region A:
Residues: [1-473]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKKVVIIGG GITGLTTMYH LQKDIRDKNL PIDTLLIEAS GKLGGKIQTV RKDGFTIERG  60
   61 PDSFLARKES AARLVKELGL GDELVNNQAG QSFILVNNRL HKMPSGSMMG IPTQITPFLF 120
  121 SGLFSPIGKL RAGFDLLMPR SKPVSDQSLG HFFRHRLGNE VVENLIEPLL SGIYAGDIDE 180
  181 MSLMSTFPQM YQIEQKHRSI SLGMRTLAPK AEKAEPKKGI FQTVKTGLES IVESLELKMH 240
  241 EGTIIKGTRI EKVAKQGDGY AITLSNGKEI EADAVVVASS HKVLPSMFAQ YKQFRFFRNI 300
  301 PSTSVANVAM AFPKSAIQRD IDGTGFVVSR NSDYTITACT WTHKKWPHTT PEGKTLLRCY 360
  361 VGRPGDEAVV EQTEEELVQL VLEDLRKTMD ITEDPEFTVV SRWKEAMPQY TVGHNERMKK 420
  421 LTTFMEKELP GIYLAGSSYA GSGLPDCIDQ GEKAAKRVLS HLEKVMNTEL IAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.045757
Match:	2ivdA
Description:	No description for 2ivdA was found.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on NADH or NADPH	5.26950448055146	bayes_pls_golite062009
oxidoreductase activity	4.51724585323847	bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity	1.3578742399915	bayes_pls_golite062009
binding	1.26657667590853	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	1.20561532241252	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.07656675953489	bayes_pls_golite062009
catalytic activity	1.03127962968326	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors	0.945028138297487	bayes_pls_golite062009
transporter activity	0.890824576391732	bayes_pls_golite062009
transmembrane transporter activity	0.706117386114413	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	0.705416796630992	bayes_pls_golite062009
substrate-specific transporter activity	0.491481205015383	bayes_pls_golite062009
nucleic acid binding	0.386071802386842	bayes_pls_golite062009
NADPH-adrenodoxin reductase activity	0.31749398611457	bayes_pls_golite062009
transcription regulator activity	0.284200164472054	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.26114823844682	bayes_pls_golite062009
DNA binding	0.175069486065946	bayes_pls_golite062009
ferrous iron binding	0.166200528859874	bayes_pls_golite062009
protein binding	0.0281459437915129	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: