YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229519410, gi...
Organism:	Vibrio cholerae RC9
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229519410, gi....

Description	E-value	Query Range	Subject Range
gi\|13537267 - gi\|13537267\|dbj\|BAB40619.1\| hypothetical protein [Vibrio proteolyticus]	137.0	[0..4]	[106..3]
FTSL_ECOLI - Cell division protein ftsL - Escherichia coli gi\|115511493, gi... - gi\|117622369\|ref\|YP_851282.1\| cell division protein FtsL [Escherichia coli APEC O1], gi\|115511493\|gb... gi\|124499074, gi... - gi\|124530650\|ref\|ZP_01701234.1\| cell division protein FtsL [Escherichia coli B], gi\|124499074\|gb\|EAY... gi\|91209147, gi\|... - gi\|91209147\|ref\|YP_539133.1\| cell division protein FtsL [Escherichia coli UTI89], gi\|91070721\|gb\|ABE... gi\|13359543, gi\|... - gi\|15829341\|ref\|NP_308114.1\| cell division protein FtsL [Escherichia coli O157:H7 str. Sakai], gi\|13... gi\|110640296, gi... - gi\|110640296\|ref\|YP_668024.1\| cell division protein FtsL [Escherichia coli 536], gi\|110341888\|gb\|ABG... gi\|110613695, gi... - gi\|110804147\|ref\|YP_687667.1\| cell division protein FtsL [Shigella flexneri 5 str. 8401], gi\|1106136... gi\|194412596, gi... - gi\|194429376\|ref\|ZP_03061901.1\| cell division protein FtsL [Escherichia coli B171], gi\|194412596\|gb\|... gi\|194434418, gi... - gi\|194434418\|ref\|ZP_03066680.1\| cell division protein FtsL [Shigella dysenteriae 1012], gi\|194417334... EG11086 - membrane bound cell division leucine zipper septum protein / Cell division and growth, membrane prot... gi\|194439392, gi... - gi\|194439392\|ref\|ZP_03071469.1\| cell division protein FtsL [Escherichia coli 101-1], gi\|194421651\|gb... gi\|195939299 - gi\|195939299\|ref\|ZP_03084681.1\| cell division protein FtsL [Escherichia coli O157:H7 str. EC4024] FTSL_SHIFL - Cell division protein FtsL OS=Shigella flexneri GN=ftsL PE=3 SV=1 gi\|208807328, gi... - gi\|208807328\|ref\|ZP_03249665.1\| cell division protein FtsL [Escherichia coli O157:H7 str. EC4206], g... gi\|24050286, gi\|... - gi\|24111528\|ref\|NP_706038.1\| cell division protein FtsL [Shigella flexneri 2a str. 301], gi\|24050286... gi\|208813602, gi... - gi\|208813602\|ref\|ZP_03254931.1\| cell division protein FtsL [Escherichia coli O157:H7 str. EC4045], g... FTSL_ECOL6 - Cell division protein FtsL OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ftsL PE... gi\|208738712, gi... - gi\|208818589\|ref\|ZP_03258909.1\| cell division protein FtsL [Escherichia coli O157:H7 str. EC4042], g... gi\|30039892, gi\|... - gi\|30061650\|ref\|NP_835821.1\| cell division protein FtsL [Shigella flexneri 2a str. 2457T], gi\|300398... gi\|209396379, gi... - gi\|209396379\|ref\|YP_002268691.1\| cell division protein FtsL [Escherichia coli O157:H7 str. EC4115], ... FTSL_ECO57 - Cell division protein FtsL OS=Escherichia coli O157:H7 GN=ftsL PE=3 SV=1 gi\|169756489, gi... - gi\|170021561\|ref\|YP_001726515.1\| cell division protein FtsL [Escherichia coli ATCC 8739], gi\|1697564... EG11086 - membrane bound cell division leucine zipper septum protein / Cell division and growth, membrane prot... gi\|169887557, gi... - gi\|170079722\|ref\|YP_001729042.1\| membrane bound cell division protein [Escherichia coli str. K-12 su... gi\|15799767, gi\|... - gi\|15799767\|ref\|NP_285779.1\| cell division protein FtsL [Escherichia coli O157:H7 EDL933], gi\|125127... gi\|170518525, gi... - gi\|170680807\|ref\|YP_001742205.1\| cell division protein FtsL [Escherichia coli SMS-3-5], gi\|170518525... gi\|170768602, gi... - gi\|170768602\|ref\|ZP_02903055.1\| cell division protein FtsL [Escherichia albertii TW07627], gi\|170122... gi\|188491137, gi... - gi\|188495938\|ref\|ZP_03003208.1\| cell division protein FtsL [Escherichia coli 53638], gi\|188491137\|gb... gi\|191167777, gi... - gi\|191167777\|ref\|ZP_03029584.1\| cell division protein FtsL [Escherichia coli B7A], gi\|190902203\|gb\|E... gi\|191174642, gi... - gi\|191174642\|ref\|ZP_03036124.1\| cell division protein FtsL [Escherichia coli F11], gi\|190905077\|gb\|E... gi\|192926468, gi... - gi\|193065881\|ref\|ZP_03046942.1\| cell division protein FtsL [Escherichia coli E22], gi\|192926468\|gb\|E... gi\|218698506, gi... - gi\|218698506\|ref\|YP_002406135.1\| cell division protein FtsL [Escherichia coli IAI39], gi\|218368492\|e... gi\|218430440, gi... - gi\|218703343\|ref\|YP_002410862.1\| cell division protein FtsL [Escherichia coli UMN026], gi\|218430440\|... gi\|209917276, gi... - gi\|209917276\|ref\|YP_002291360.1\| cell division protein FtsL [Escherichia coli SE11], gi\|209910535\|db... gi\|215263321, gi... - gi\|215485249\|ref\|YP_002327680.1\| cell division protein FtsL [Escherichia coli O127:H6 str. E2348/69]... gi\|217321296, gi... - gi\|217325075\|ref\|ZP_03441159.1\| cell division protein FtsL [Escherichia coli O157:H7 str. TW14588], ... gi\|218547540, gi... - gi\|218547540\|ref\|YP_002381331.1\| cell division protein FtsL [Escherichia fergusonii ATCC 35469], gi\|... gi\|218552666, gi... - gi\|218552666\|ref\|YP_002385579.1\| cell division protein FtsL [Escherichia coli IAI1], gi\|218359434\|em... gi\|218363792, gi... - gi\|218557023\|ref\|YP_002389936.1\| cell division protein FtsL [Escherichia coli S88], gi\|218363792\|emb... gi\|218425524, gi... - gi\|218687960\|ref\|YP_002396172.1\| cell division protein FtsL [Escherichia coli ED1a], gi\|218425524\|em... gi\|218350284, gi... - gi\|218693552\|ref\|YP_002401219.1\| cell division protein FtsL [Escherichia coli 55989], gi\|218350284\|e... FTSL_ECOL6 - Cell division protein FtsL OS=Escherichia coli O6 GN=ftsL PE=3 SV=1 gi\|168751407, gi... - gi\|188014521\|gb\|EDU52643.1\| cell division protein FtsL [Escherichia coli O157:H7 str. EC4113], gi\|16... gi\|189357021, gi... - gi\|189357021\|gb\|EDU75440.1\| cell division protein FtsL [Escherichia coli O157:H7 str. EC4401], gi\|16... gi\|168764038, gi... - gi\|189365873\|gb\|EDU84289.1\| cell division protein FtsL [Escherichia coli O157:H7 str. EC4501], gi\|16... gi\|168771307, gi... - gi\|189359916\|gb\|EDU78335.1\| cell division protein FtsL [Escherichia coli O157:H7 str. EC4486], gi\|16... gi\|187767739, gi... - gi\|187767739\|gb\|EDU31583.1\| cell division protein FtsL [Escherichia coli O157:H7 str. EC4196], gi\|16... gi\|168781968, gi... - gi\|189000450\|gb\|EDU69436.1\| cell division protein FtsL [Escherichia coli O157:H7 str. EC4076], gi\|16... gi\|189370831, gi... - gi\|189370831\|gb\|EDU89247.1\| cell division protein FtsL [Escherichia coli O157:H7 str. EC869], gi\|168... gi\|189376367, gi... - gi\|189376367\|gb\|EDU94783.1\| cell division protein FtsL [Escherichia coli O157:H7 str. EC508], gi\|168... gi\|89106966, gi\|... - gi\|89106966\|ref\|AP_000746.1\| membrane bound cell division protein at septum containing leucine zippe... FTSL_SHIDS - Cell division protein FtsL OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ftsL PE=3 SV=1 gi\|82542687, gi\|... - gi\|82542687\|ref\|YP_406634.1\| cell division protein FtsL [Shigella boydii Sb227], gi\|81244098\|gb\|ABB6... gi\|187733151, gi... - gi\|75175640\|ref\|ZP_00695848.1\| COG3116: Cell division protein [Shigella boydii BS512], gi\|187733151\|... gi\|193070835, gi... - gi\|75234320\|ref\|ZP_00718698.1\| COG3116: Cell division protein [Escherichia coli E110019], gi\|1930708... gi\|74310702, gi\|... - gi\|74310702\|ref\|YP_309121.1\| cell division protein FtsL [Shigella sonnei Ss046], gi\|73854179\|gb\|AAZ8... gi\|75189183, gi\|... - gi\|75189183\|ref\|ZP_00702450.1\| COG3116: Cell division protein [Escherichia coli E24377A], gi\|1571568... gi\|75194300, gi\|... - gi\|75194300\|ref\|ZP_00704370.1\| COG3116: Cell division protein [Escherichia coli HS], gi\|157159554\|re... gi\|254791220, gi... - gi\|254791220\|ref\|YP_003076057.1\| membrane bound cell division protein at septum containing leucine z... gi\|254160205, gi... - gi\|254160205\|ref\|YP_003043313.1\| membrane bound cell division protein at septum containing leucine z... gi\|226840604, gi... - gi\|254037498\|ref\|ZP_04871575.1\| cell division protein FtsL [Escherichia sp. 1_1_43], gi\|226840604\|gb... gi\|253325931, gi... - gi\|254287008\|ref\|YP_003052756.1\| membrane bound cell division protein at septum containing leucine z... gi\|251783646, gi... - gi\|251783646\|ref\|YP_002997950.1\| hypothetical protein B21_00083 [Escherichia coli BL21], gi\|24237591... gi\|238899484, gi... - gi\|238899484\|ref\|YP_002925280.1\| membrane bound cell division protein at septum containing leucine z... gi\|226902144, gi... - gi\|237704232\|ref\|ZP_04534713.1\| cell division protein FtsL [Escherichia sp. 3_2_53FAA], gi\|226902144... gi\|227837841, gi... - gi\|227885012\|ref\|ZP_04002817.1\| cell division protein FtsL [Escherichia coli 83972], gi\|227837841\|gb...	135.0	[0..9]	[106..24]
gi\|75511693 - gi\|75511693\|ref\|ZP_00734331.1\| COG3116: Cell division protein [Escherichia coli 53638] gi\|75256045 - gi\|75256045\|ref\|ZP_00727758.1\| COG3116: Cell division protein [Escherichia coli E22] gi\|75235488 - gi\|75235488\|ref\|ZP_00719692.1\| COG3116: Cell division protein [Escherichia coli F11] gi\|75229068 - gi\|75229068\|ref\|ZP_00715648.1\| COG3116: Cell division protein [Escherichia coli B7A] gi\|75209396 - gi\|75209396\|ref\|ZP_00709628.1\| COG3116: Cell division protein [Escherichia coli B171] gi\|83585195 - gi\|83585195\|ref\|ZP_00923845.1\| COG3116: Cell division protein [Escherichia coli 101-1]	135.0	[0..9]	[106..9]
gi\|168230400, gi... - gi\|205334916\|gb\|EDZ21680.1\| cell division protein FtsL [Salmonella enterica subsp. enterica serovar ... gi\|168234885, gi... - gi\|197291713\|gb\|EDY31063.1\| cell division protein FtsL [Salmonella enterica subsp. enterica serovar ... gi\|205337468, gi... - gi\|205337468\|gb\|EDZ24232.1\| cell division protein FtsL [Salmonella enterica subsp. enterica serovar ... gi\|205348752, gi... - gi\|205348752\|gb\|EDZ35383.1\| cell division protein FtsL [Salmonella enterica subsp. enterica serovar ... gi\|167550684, gi... - gi\|205324375\|gb\|EDZ12214.1\| cell division protein FtsL [Salmonella enterica subsp. enterica serovar ... gi\|205331517, gi... - gi\|205331517\|gb\|EDZ18281.1\| cell division protein FtsL [Salmonella enterica subsp. enterica serovar ... lcl\|NC_016856.1_... - [gene=ftsL] [protein=cell division protein FtsL] [protein_id=YP_005235780.1] [location=142057..14242... gi\|205271241, gi... - gi\|205351460\|ref\|YP_002225261.1\| cell division protein FtsL [Salmonella enterica subsp. enterica ser... gi\|206707438, gi... - gi\|207855635\|ref\|YP_002242286.1\| cell division protein FtsL [Salmonella enterica subsp. enterica ser... gi\|213052856 - gi\|213052856\|ref\|ZP_03345734.1\| cell division protein FtsL [Salmonella enterica subsp. enterica sero... gi\|213426161 - gi\|213426161\|ref\|ZP_03358911.1\| cell division protein FtsL [Salmonella enterica subsp. enterica sero... gi\|197361329, gi... - gi\|197361329\|ref\|YP_002140964.1\| cell division protein FtsL [Salmonella enterica subsp. enterica ser... gi\|198242976, gi... - gi\|198242976\|ref\|YP_002214073.1\| cell division protein FtsL [Salmonella enterica subsp. enterica ser... gi\|199604598, gi... - gi\|200387500\|ref\|ZP_03214112.1\| cell division protein FtsL [Salmonella enterica subsp. enterica sero... gi\|204926902, gi... - gi\|204926902\|ref\|ZP_03218104.1\| cell division protein FtsL [Salmonella enterica subsp. enterica sero... FTSL_SALTY - Cell division protein FtsL OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ftsL P... gi\|194456693, gi... - gi\|194470329\|ref\|ZP_03076313.1\| cell division protein FtsL [Salmonella enterica subsp. enterica sero... gi\|29136290, gi\|... - gi\|29140666\|ref\|NP_804008.1\| cell division protein FtsL [Salmonella enterica subsp. enterica serovar... gi\|194737711, gi... - gi\|194737711\|ref\|YP_002113139.1\| cell division protein FtsL [Salmonella enterica subsp. enterica ser... gi\|197214276, gi... - gi\|197250573\|ref\|YP_002145107.1\| cell division protein FtsL [Salmonella enterica subsp. enterica ser... gi\|25367070, gi\|... - gi\|25367070\|pir\|\|AF0517 cell division protein FtsL [imported] - Salmonella enterica subsp. enterica ... gi\|197242234, gi... - gi\|197263979\|ref\|ZP_03164053.1\| cell division protein FtsL [Salmonella enterica subsp. enterica sero... gi\|168464327, gi... - gi\|195632742\|gb\|EDX51196.1\| cell division protein FtsL [Salmonella enterica subsp. enterica serovar ... gi\|205342475, gi... - gi\|205342475\|gb\|EDZ29239.1\| cell division protein FtsL [Salmonella enterica subsp. enterica serovar ... gi\|16759116 - gi\|16759116\|ref\|NP_454733.1\| cell division protein FtsL [Salmonella enterica subsp. enterica serovar... gi\|194404869, gi... - gi\|194446206\|ref\|YP_002039353.1\| cell division protein FtsL [Salmonella enterica subsp. enterica ser... gi\|194448775, gi... - gi\|194448775\|ref\|YP_002044091.1\| cell division protein FtsL [Salmonella enterica subsp. enterica ser... gi\|56126650, gi\|... - gi\|56412393\|ref\|YP_149468.1\| cell division protein FtsL [Salmonella enterica subsp. enterica serovar... gi\|213979947 - gi\|213979947\|ref\|ZP_03407206.1\| cell division protein FtsL [Salmonella enterica subsp. enterica sero... gi\|224581964, gi... - gi\|224581964\|ref\|YP_002635762.1\| cell division protein FtsL [Salmonella enterica subsp. enterica ser... gi\|237729381, gi... - gi\|237729381\|ref\|ZP_04559862.1\| cell division protein FtsL [Citrobacter sp. 30_2], gi\|226909110\|gb\|E... gi\|238911178 - gi\|238911178\|ref\|ZP_04655015.1\| cell division protein FtsL [Salmonella enterica subsp. enterica sero... gi\|213585690 - gi\|213585690\|ref\|ZP_03367516.1\| cell division protein FtsL [Salmonella enterica subsp. enterica sero... gi\|213612819 - gi\|213612819\|ref\|ZP_03370645.1\| cell division protein FtsL [Salmonella enterica subsp. enterica sero... gi\|213647634 - gi\|213647634\|ref\|ZP_03377687.1\| cell division protein FtsL [Salmonella enterica subsp. enterica sero... gi\|213858023 - gi\|213858023\|ref\|ZP_03384994.1\| cell division protein FtsL [Salmonella enterica subsp. enterica sero... FTSL_SALTY - Cell division protein FtsL OS=Salmonella typhimurium GN=ftsL PE=3 SV=1	135.0	[0..9]	[106..24]
gi\|37678791, gi\|... - gi\|37678791\|ref\|NP_933400.1\| cell division protein FtsL [Vibrio vulnificus YJ016], gi\|37197532\|dbj\|B... gi\|27360163, gi\|... - gi\|27364046\|ref\|NP_759574.1\| cell division protein FtsL [Vibrio vulnificus CMCP6], gi\|27360163\|gb\|AA...	133.0	[0..3]	[106..2]
gi\|116219994, gi... - gi\|75819335\|ref\|ZP_00749420.1\| COG3116: Cell division protein [Vibrio cholerae V51], gi\|116219994\|re...	133.0	[0..1]	[106..1]
gi\|62178688, gi\|... - gi\|62178688\|ref\|YP_215105.1\| cell division protein FtsL [Salmonella enterica subsp. enterica serovar...	132.0	[0..9]	[106..24]
gi\|84394441, gi\|... - gi\|84394441\|ref\|ZP_00993157.1\| Cell division protein FtsL [Vibrio splendidus 12B01], gi\|84374940\|gb\|...	130.0	[0..5]	[106..4]
gi\|86148533, gi\|... - gi\|86148533\|ref\|ZP_01066820.1\| Cell division protein FtsL [Vibrio sp. MED222], gi\|85833679\|gb\|EAQ518... gi\|218708479, gi... - gi\|218708479\|ref\|YP_002416100.1\| Cell division protein FtsL [Vibrio splendidus LGP32], gi\|218321498\|...	129.0	[0..5]	[106..4]
gi\|75854411, gi\|... - gi\|75854411\|ref\|ZP_00762106.1\| COG3116: Cell division protein [Vibrio sp. Ex25], gi\|116183860\|ref\|ZP...	129.0	[0..4]	[106..3]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRQSPPNLA KLIALDLLTV GRVPLLLLVL IFSCAMGVVF MTHHTRQAIS AKDQAFMERE  60
   61 RLDNEWRNLI LEETALAEHS RVQQLARKDL EMKRPDSDKE VVINLK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	63.920819
Match:	PF04999.4
Description:	No description for PF04999.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.750	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.728	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.619	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.595	N/A	N/A	a.5.7	4-hydroxy-2-oxovalerate aldolase DmpG, communication domain
View	Download	0.520	N/A	N/A	a.48.3	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits