YRC Public Data Repository - Protein Structure Prediction

Protein:	BR44_PONPY
Organism:	Pongo pygmaeus
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BR44_PONPY.

Description	E-value	Query Range	Subject Range
gi\|109019387, gi... - gi\|109019387\|ref\|XP_001091697.1\| PREDICTED: brain protein 44 [Macaca mulatta], gi\|109018224\|ref\|XP_0...	194.0	[0..1]	[127..1]
HGNC:24515\|Ensem... - protein 44 gi\|114561170, gi... - gi\|114561172\|ref\|XP_001174840.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi\|114... gi\|117644994 - gi\|117644994\|emb\|CAL37963.1\| hypothetical protein [synthetic construct] BRP44 - brain protein 44	193.0	[0..1]	[127..1]
gi\|125777326, gi... - gi\|54639317\|gb\|EAL28719.1\| GA14151-PA [Drosophila pseudoobscura], gi\|125777326\|ref\|XP_001359570.1\| G...	191.0	[0..1]	[123..11]
gi\|57089027 - gi\|57089027\|ref\|XP_537209.1\| PREDICTED: similar to Brain protein 44 [Canis familiaris]	190.0	[0..1]	[127..1]
gi\|62859799, gi\|... - gi\|62859799\|ref\|NP_001016695.1\| brain protein 44 [Xenopus (Silurana) tropicalis], gi\|169642463\|gb\|AA...	186.0	[0..4]	[124..2]
gi\|47938856, gi\|... - gi\|47938856\|gb\|AAH71315.1\| Brp44 protein [Danio rerio], gi\|169154836\|emb\|CAQ13558.1\| (novel protein,...	181.0	[0..7]	[127..4]
gi\|27882199, gi\|... - gi\|27882199\|gb\|AAH44023.1\| MGC53394 protein [Xenopus laevis], gi\|148236211\|ref\|NP_001079531.1\| hypot...	180.0	[0..4]	[123..2]
gi\|87619697 - gi\|87619697\|gb\|ABD38642.1\| hypothetical protein [Ictalurus punctatus]	176.0	[0..7]	[124..4]
CG9396-PA - This gene is referred to in FlyBase by the symbol Dmel\CG9396 (CG9396, FBgn0037714). It is a protein...	176.0	[0..6]	[121..18]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAAGARGLR ATYHRLLDKV ELMLPEKLRP LYNHPAGPRT VFFWAPIMKR GLVCAGLADM  60
   61 ARPAEKLSTA QSAVLMATGF IWSRYSLVII PKNWSLFAVN FFVGAAGASQ LFRIWRYNQE 120
  121 LKAKAHK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.086186
Match:	PF03650.4
Description:	No description for PF03650.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.971	N/A	N/A	a.24.18	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits