YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229140707, gi...
Organism:	Bacillus cereus BDRD-ST26
Length:	555 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229140707, gi....

Description	E-value	Query Range	Subject Range
gi\|145902918, gi... - gi\|52785428\|ref\|YP_091257.1\| YkqC [Bacillus licheniformis ATCC 14580], gi\|52347930\|gb\|AAU40564.1\| Yk...	0.0	[1..555]	[1..555]
RNJ1_BACSU - Ribonuclease J1 OS=Bacillus subtilis (strain 168) GN=rnjA PE=1 SV=1 YKQC_BACSU, RNJ1... - UPF0036 protein ykqC - Bacillus subtilis, Ribonuclease J 1 OS=Bacillus subtilis GN=rnjA PE=1 SV=1 gi\|221322845 - gi\|221322845\|ref\|ZP_03604139.1\| hypothetical protein BsubsS_08037 [Bacillus subtilis subsp. subtilis... gi\|221318571 - gi\|221318571\|ref\|ZP_03599865.1\| hypothetical protein BsubsJ_07926 [Bacillus subtilis subsp. subtilis... gi\|221313649 - gi\|221313649\|ref\|ZP_03595454.1\| hypothetical protein BsubsN3_07992 [Bacillus subtilis subsp. subtili...	0.0	[1..555]	[1..555]
gi\|89202256, gi\|... - gi\|89202256\|ref\|ZP_01180983.1\| Conserved hypothetical protein MG423 [Bacillus cereus subsp. cytotoxi...	0.0	[1..555]	[1..555]
gi\|42783073, gi\|... - gi\|42783073\|ref\|NP_980320.1\| hypothetical protein BCE_4026 [Bacillus cereus ATCC 10987], gi\|42739001...	0.0	[1..555]	[1..555]
gi\|89206418, gi\|... - gi\|89206418\|ref\|ZP_01184977.1\| Conserved hypothetical protein MG423 [Bacillus weihenstephanensis KBA... gi\|229013183, gi... - gi\|229013183\|ref\|ZP_04170327.1\| Ribonuclease J 1 [Bacillus mycoides DSM 2048], gi\|228748133\|gb\|EEL97... gi\|229134786, gi... - gi\|229134786\|ref\|ZP_04263594.1\| Ribonuclease J 1 [Bacillus cereus BDRD-ST196], gi\|228648639\|gb\|EEL04... gi\|228717651, gi... - gi\|229061644\|ref\|ZP_04198983.1\| Ribonuclease J 1 [Bacillus cereus AH603], gi\|228717651\|gb\|EEL69307.1...	0.0	[1..555]	[1..555]
gi\|89085995, gi\|... - gi\|89099386\|ref\|ZP_01172263.1\| hypothetical protein B14911_22447 [Bacillus sp. NRRL B-14911], gi\|890...	0.0	[1..555]	[1..555]
gi\|25304211 - pir\|\|F83982 hypothetical protein BH2662 [imported] - Bacillus halodurans (strain C-125) gi\|15615225, gi\|... - gi\|15615225\|ref\|NP_243528.1\| hypothetical protein BH2662 [Bacillus halodurans C-125], gi\|10175283\|db...	0.0	[1..555]	[1..555]
gi\|29897622, gi\|... - gi\|30022065\|ref\|NP_833696.1\| Zn-dependent hydrolase [Bacillus cereus ATCC 14579], gi\|29897622\|gb\|AAP...	0.0	[1..555]	[1..555]
gi\|23098863, gi\|... - gi\|23098863\|ref\|NP_692329.1\| hypothetical protein OB1408 [Oceanobacillus iheyensis HTE831], gi\|22777...	0.0	[1..555]	[1..555]

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Predicted Domain #1

Region A:
Residues: [1-436]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLKNDQAA VFALGGLGEI GKNTYAVQFQ DEIIIIDAGI KFPEDELLGI DYVIPDYTYF  60
   61 VRNEDKIKGL FITHGHEDHI GGIPYLLRQV NIPIYGGKLA IALIKNKLEE HGLLRKAKLY 120
  121 EIQEDDVIKF KKTSVSFFRT THSIPDSYGV VVKTPQGQVV HTGDFKFDFT PVGEPADLTK 180
  181 MAEIGKDGVL CLLSDSTNSE VPNFTMSERR VGDSIQDIFR KVEGRIIFAT FASNIHRLQQ 240
  241 VVEAAVENNR KVAVFGRSME AAIEIGQNLG YIRCPKDTFI DASQLNRLPA NKVVILCTGS 300
  301 QGEPMAALSR IANGTHRQIQ IIPGDTVVFS SSPIPGNTIS VSRTINMLYR AGADVIHGKL 360
  361 SNIHTSGHGG QEEQKLMLRL IKPKYFMPIH GEYRMQRMHM KLANDCGIPE ENCFIMDNGD 420
  421 VLALRSDEAS VAGKIP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.39794
Match:	2i7tA
Description:	No description for 2i7tA was found.

Predicted Domain #2

Region A:
Residues: [437-555]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGSVYIDGNG IGDIGNIVLR DRRILSEEGL VIVVVSIDMK EFKVAAGPDI ISRGFVYMRE  60
   61 SSDLINDAQT LITTHLEKVM ERKTTQWSEI KNEITDTLAP FLYEKTKRRP MILPIIMEI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits