YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229189335, gi...
Organism:	Bacillus cereus ATCC 10876
Length:	64 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229189335, gi....

Description	E-value	Query Range	Subject Range
gi\|227003632, gi... - gi\|227816009\|ref\|YP_002816018.1\| spore germination protein GerPD [Bacillus anthracis str. CDC 684], ... gi\|229268954, gi... - gi\|229604546\|ref\|YP_002865676.1\| spore germination protein GerPD [Bacillus anthracis str. A0248], gi... gi\|254682686 - gi\|254682686\|ref\|ZP_05146547.1\| spore germination protein GerPD [Bacillus anthracis str. CNEVA-9066] gi\|254725479 - gi\|254725479\|ref\|ZP_05187261.1\| spore germination protein GerPD [Bacillus anthracis str. A1055] gi\|254734104 - gi\|254734104\|ref\|ZP_05191817.1\| spore germination protein GerPD [Bacillus anthracis str. Western Nor... gi\|254740252 - gi\|254740252\|ref\|ZP_05197944.1\| spore germination protein GerPD [Bacillus anthracis str. Kruger B] gi\|254753592 - gi\|254753592\|ref\|ZP_05205628.1\| spore germination protein GerPD [Bacillus anthracis str. Vollum] gi\|254758689 - gi\|254758689\|ref\|ZP_05210716.1\| spore germination protein GerPD [Bacillus anthracis str. Australia 9... gi\|47501563, gi\|... - gi\|47526415\|ref\|YP_017764.1\| spore germination protein GerPD [Bacillus anthracis str. 'Ames Ancestor... gi\|196037433, gi... - gi\|196037433\|ref\|ZP_03104744.1\| spore germination protein GerPD [Bacillus cereus NVH0597-99], gi\|196... gi\|30261253, gi\|... - gi\|30261253\|ref\|NP_843630.1\| spore germination protein GerPD [Bacillus anthracis str. Ames], gi\|3025... gi\|195991169, gi... - gi\|196036194\|ref\|ZP_03103593.1\| spore germination protein GerPD [Bacillus cereus W], gi\|195991169\|gb... gi\|65318524, gi\|... - gi\|65318524\|ref\|ZP_00391483.1\| COG1335: Amidases related to nicotinamidase [Bacillus anthracis str. ... gi\|206745263, gi... - gi\|206976580\|ref\|ZP_03237486.1\| spore germination protein GerPD [Bacillus cereus H3081.97], gi\|20674... gi\|196024744, gi... - gi\|196044105\|ref\|ZP_03111341.1\| spore germination protein GerPD [Bacillus cereus 03BB108], gi\|196024... gi\|218536019, gi... - gi\|218902342\|ref\|YP_002450176.1\| spore germination protein GerPD [Bacillus cereus AH820], gi\|2185360... gi\|217064656, gi... - gi\|217958723\|ref\|YP_002337271.1\| spore germination protein GerPD [Bacillus cereus AH187], gi\|2170646... gi\|49480890, gi\|... - gi\|49480890\|ref\|YP_035382.1\| spore germination protein PD [Bacillus thuringiensis serovar konkukian ... gi\|49178012, gi\|... - gi\|49184085\|ref\|YP_027337.1\| spore germination protein GerPD [Bacillus anthracis str. Sterne], gi\|49... gi\|221238925, gi... - gi\|222094867\|ref\|YP_002528927.1\| spore germination protein PD [Bacillus cereus Q1], gi\|221238925\|gb\|... gi\|165873108, gi... - gi\|165873108\|ref\|ZP_02217726.1\| spore germination protein GerPD [Bacillus anthracis str. A0488], gi\|... gi\|167511816, gi... - gi\|167640215\|ref\|ZP_02398481.1\| spore germination protein GerPD [Bacillus anthracis str. A0193], gi\|... gi\|167529234, gi... - gi\|167635406\|ref\|ZP_02393720.1\| spore germination protein GerPD [Bacillus anthracis str. A0442], gi\|... gi\|170707654, gi... - gi\|170707654\|ref\|ZP_02898106.1\| spore germination protein GerPD [Bacillus anthracis str. A0389], gi\|... gi\|170688076, gi... - gi\|170688076\|ref\|ZP_02879288.1\| spore germination protein GerPD [Bacillus anthracis str. A0465], gi\|... gi\|190566642, gi... - gi\|190566642\|ref\|ZP_03019559.1\| spore germination protein GerPD [Bacillus anthracis Tsiankovskii-I],... gi\|177655499, gi... - gi\|177655499\|ref\|ZP_02936942.1\| spore germination protein GerPD [Bacillus anthracis str. A0174], gi\|... gi\|118476730, gi... - gi\|118476730\|ref\|YP_893881.1\| spore germination protein PD [Bacillus thuringiensis str. Al Hakam], g...	105.0	[0..1]	[64..1]
gi\|89205679, gi\|... - gi\|89205679\|ref\|ZP_01184247.1\| spore germination protein PD [Bacillus weihenstephanensis KBAB4], gi\|...	104.0	[0..1]	[64..1]
gi\|52144184, gi\|... - gi\|52144184\|ref\|YP_082644.1\| spore germination protein PD [Bacillus cereus E33L], gi\|51977653\|gb\|AAU...	104.0	[0..1]	[64..1]
gi\|228628761, gi... - gi\|229154813\|ref\|ZP_04282928.1\| spore germination protein gerPD [Bacillus cereus ATCC 4342], gi\|2286... gi\|47555800, gi\|... - gi\|47567605\|ref\|ZP_00238316.1\| spore germination protein PD-related protein [Bacillus cereus G9241],... gi\|42780323, gi\|... - gi\|42780323\|ref\|NP_977570.1\| spore germination protein GerPD [Bacillus cereus ATCC 10987], gi\|427362...	103.0	[0..1]	[64..1]
gi\|89150264, gi\|... - gi\|89201752\|ref\|ZP_01180488.1\| spore germination protein PD [Bacillus cereus subsp. cytotoxis NVH 39...	102.0	[0..1]	[64..1]
gi\|56419222, gi\|... - gi\|56419222\|ref\|YP_146540.1\| spore germination protein [Geobacillus kaustophilus HTA426], gi\|5637906...	95.0	[0..5]	[63..1]
GERPD_BACSU - Probable spore germination protein GerPD OS=Bacillus subtilis (strain 168) GN=gerPD PE=1 SV=1 gi\|221318154 - gi\|221318154\|ref\|ZP_03599448.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. JH... gi\|221322429 - gi\|221322429\|ref\|ZP_03603723.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. SM... GERPD_BACSU, GEP... - Probable spore germination protein gerPD OS=Bacillus subtilis GN=gerPD PE=1 SV=1, (O06718) Probable ... gi\|221313231 - gi\|221313231\|ref\|ZP_03595036.1\| spore germination protein [Bacillus subtilis subsp. subtilis str. NC...	93.0	[0..1]	[58..1]
gi\|89098022, gi\|... - gi\|89098022\|ref\|ZP_01170908.1\| hypothetical protein B14911_20878 [Bacillus sp. NRRL B-14911], gi\|890...	90.0	[0..1]	[58..1]
gi\|52347436, gi\|... - gi\|52784934\|ref\|YP_090763.1\| GerPD [Bacillus licheniformis ATCC 14580], gi\|52347436\|gb\|AAU40070.1\| G...	90.0	[0..1]	[58..1]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLNVVNREL KVGQIKMNGV SSSALFLIGD ANLLILSSIL DTPFETVTEG PFVPLVTDVP  60
   61 PTPG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits