YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229369513, gi...
Organism:	Vibrio cholerae MJ-1236
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229369513, gi....

Description	E-value	Query Range	Subject Range
gi\|90437056, gi\|... - gi\|90581758\|ref\|ZP_01237542.1\| 50S ribosomal protein L3 [Vibrio angustum S14], gi\|90437056\|gb\|EAS622... gi\|89047583, gi\|... - gi\|89076770\|ref\|ZP_01163043.1\| 50S ribosomal protein L3 [Photobacterium sp. SKA34], gi\|89047583\|gb\|E...	307.0	[0..1]	[209..1]
RL3_VIBPA - 50S ribosomal protein L3 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rplC PE=... RL3_VIBPA - 50S ribosomal protein L3 OS=Vibrio parahaemolyticus GN=rplC PE=3 SV=1 gi\|153840341, gi... - gi\|153840341\|ref\|ZP_01993008.1\| ribosomal protein L3 [Vibrio parahaemolyticus AQ3810], gi\|149745999\|...	305.0	[0..1]	[209..1]
gi\|91187418, gi\|... - gi\|91229293\|ref\|ZP_01262910.1\| 50S ribosomal protein L3 [Vibrio alginolyticus 12G01], gi\|91187418\|gb...	305.0	[0..1]	[209..1]
gi\|84394648, gi\|... - gi\|84394648\|ref\|ZP_00993340.1\| 50S ribosomal protein L3 [Vibrio splendidus 12B01], gi\|84374730\|gb\|EA... gi\|85833333, gi\|... - gi\|86148881\|ref\|ZP_01067133.1\| 50S ribosomal protein L3 [Vibrio sp. MED222], gi\|85833333\|gb\|EAQ51539... RL3_VIBTL - 50S ribosomal protein L3 OS=Vibrio tasmaniensis (strain LGP32) GN=rplC PE=3 SV=1	305.0	[0..1]	[209..1]
gi\|90415162, gi\|... - gi\|90415162\|ref\|ZP_01223111.1\| 50S ribosomal protein L3 [Photobacterium profundum 3TCK], gi\|90323709...	305.0	[0..1]	[209..1]
RL3_PHOPR - 50S ribosomal protein L3 OS=Photobacterium profundum (strain SS9) GN=rplC PE=3 SV=1 RL3_PHOPR - 50S ribosomal protein L3 OS=Photobacterium profundum GN=rplC PE=3 SV=1	305.0	[0..1]	[209..1]
RL3_VIBVU - 50S ribosomal protein L3 OS=Vibrio vulnificus (strain CMCP6) GN=rplC PE=3 SV=1 RL3_VIBVU - 50S ribosomal protein L3 OS=Vibrio vulnificus GN=rplC PE=3 SV=1	302.0	[0..1]	[209..1]
RL3_VIBVY - 50S ribosomal protein L3 OS=Vibrio vulnificus (strain YJ016) GN=rplC PE=3 SV=1	301.0	[0..1]	[209..1]
gi\|89080213, gi\|... - gi\|89095538\|ref\|ZP_01168443.1\| 50S ribosomal protein L3 [Oceanospirillum sp. MED92], gi\|89080213\|gb\|...	300.0	[0..2]	[209..3]
RL3_PASMU - 50S ribosomal protein L3 OS=Pasteurella multocida GN=rplC PE=3 SV=1 RL3_PASMU - 50S ribosomal protein L3 OS=Pasteurella multocida (strain Pm70) GN=rplC PE=3 SV=1	296.0	[0..1]	[209..1]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGLIGRKVG MTRVFTEDGV SIPVTVVEVE ANRVSQVKTL ETDGYAAIQV TTGSKKANRV  60
   61 TKPEAGHFAK AGVEAGRGLW EFRLENGEEF AVGSELTVEL FNEVKKVDVT GTSKGKGFQG 120
  121 AVKRWNFRTQ DMTHGNSLSH RAPGSIGQCQ TPGRVFKGKK MAGHMGAERV TTQNLEIVRV 180
  181 DAERNLLLIK GAVPGATGGN VIVKPAVKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.0
Match:	1p85B
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	8.74976995123472	bayes_pls_golite062009
structural molecule activity	8.17182185344538	bayes_pls_golite062009
translation initiation factor activity	2.68619850021832	bayes_pls_golite062009
translation regulator activity	2.20347076721097	bayes_pls_golite062009
translation factor activity, nucleic acid binding	2.18748808024313	bayes_pls_golite062009
nucleic acid binding	1.73237871506838	bayes_pls_golite062009
binding	1.44145316612405	bayes_pls_golite062009
peptidyltransferase activity	1.25473146071242	bayes_pls_golite062009
RNA binding	0.798696391797967	bayes_pls_golite062009
protein binding	0.449435758237719	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: