YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253723882, gi...
Organism:	Staphylococcus aureus subsp. aureus USA300_TCH959
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253723882, gi....

Description	E-value	Query Range	Subject Range
Y1273_STAEQ - Putative universal stress protein SERP1273 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A)... Y1385_STAES - Putative universal stress protein SE_1385 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_13...	166.0	[0..1]	[166..1]
Y1215_STAHJ - Putative universal stress protein SH1215 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1215 ...	160.0	[0..1]	[164..1]
Y1056_STAS1 - Putative universal stress protein SSP1056 OS=Staphylococcus saprophyticus subsp. saprophyticus (stra...	157.0	[0..1]	[165..1]
gi\|228917268, gi... - gi\|228917268\|ref\|ZP_04080825.1\| Universal stress protein [Bacillus thuringiensis serovar pulsiensis ... gi\|228935935, gi... - gi\|228935935\|ref\|ZP_04098745.1\| Universal stress protein [Bacillus thuringiensis serovar andalousien... gi\|228929678, gi... - gi\|228929678\|ref\|ZP_04092696.1\| Universal stress protein [Bacillus thuringiensis serovar pondicherie... gi\|228771923, gi... - gi\|228987875\|ref\|ZP_04147984.1\| Universal stress protein [Bacillus thuringiensis serovar tochigiensi... gi\|228811341, gi... - gi\|228948354\|ref\|ZP_04110637.1\| Universal stress protein [Bacillus thuringiensis serovar monterrey B... gi\|229124195, gi... - gi\|229124195\|ref\|ZP_04253387.1\| Universal stress protein [Bacillus cereus 95/8201], gi\|228659497\|gb\|... gi\|229093721, gi... - gi\|229093721\|ref\|ZP_04224820.1\| Universal stress protein [Bacillus cereus Rock3-42], gi\|228689606\|gb... gi\|228625191, gi... - gi\|229158233\|ref\|ZP_04286300.1\| Universal stress protein [Bacillus cereus ATCC 4342], gi\|228625191\|g... gi\|229141353, gi... - gi\|229141353\|ref\|ZP_04269891.1\| Universal stress protein [Bacillus cereus BDRD-ST26], gi\|228642134\|g... gi\|229198783, gi... - gi\|229198783\|ref\|ZP_04325479.1\| Universal stress protein [Bacillus cereus m1293], gi\|228584716\|gb\|EE... gi\|229186885, gi... - gi\|229186885\|ref\|ZP_04314040.1\| Universal stress protein [Bacillus cereus BGSC 6E1], gi\|228596622\|gb... gi\|65321995 - gi\|65321995\|ref\|ZP_00394954.1\| COG0589: Universal stress protein UspA and related nucleotide-binding... gi\|118479769, gi... - gi\|118479769\|ref\|YP_896920.1\| universal stress protein [Bacillus thuringiensis str. Al Hakam], gi\|11...	145.0	[0..4]	[151..23]
gi\|25490777 - pir\|\|H84047 hypothetical protein BH3184 [imported] - Bacillus halodurans (strain C-125) gi\|10175807, gi\|... - gi\|15615746\|ref\|NP_244050.1\| hypothetical protein BH3184 [Bacillus halodurans C-125], gi\|10175807\|db...	141.0	[0..3]	[145..1]
gi\|163864554, gi... - gi\|89204123\|ref\|ZP_01182701.1\| UspA [Bacillus weihenstephanensis KBAB4], gi\|89157696\|gb\|EAR77687.1\| ...	140.0	[0..4]	[151..5]
gi\|218899779, gi... - gi\|218899779\|ref\|YP_002448190.1\| universal stress protein family [Bacillus cereus G9842], gi\|2185454... gi\|228856494, gi... - gi\|228903143\|ref\|ZP_04067278.1\| Universal stress protein [Bacillus thuringiensis IBL 4222], gi\|22885... gi\|228791977, gi... - gi\|228967722\|ref\|ZP_04128740.1\| Universal stress protein [Bacillus thuringiensis serovar sotto str. ... gi\|75759985, gi\|... - gi\|75759985\|ref\|ZP_00740053.1\| Universal stress protein family [Bacillus thuringiensis serovar israe...	140.0	[0..4]	[151..5]
gi\|255521295 - gi\|255521295\|ref\|ZP_05388532.1\| hypothetical protein LmonocFSL_08735 [Listeria monocytogenes FSL J1-... gi\|254992102 - gi\|254992102\|ref\|ZP_05274292.1\| hypothetical protein LmonocytoFSL_02719 [Listeria monocytogenes FSL ... gi\|46881080, gi\|... - gi\|46907811\|ref\|YP_014200.1\| universal stress protein [Listeria monocytogenes str. 4b F2365], gi\|468... gi\|254873941, gi... - gi\|254873941\|ref\|ZP_05246651.1\| hypothetical protein LmonocytogFSL_14412 [Listeria monocytogenes FSL... gi\|47018170, gi\|... - gi\|47093442\|ref\|ZP_00231206.1\| universal stress protein family [Listeria monocytogenes str. 4b H7858... gi\|254931520, gi... - gi\|254931520\|ref\|ZP_05264879.1\| hypothetical protein LmonH_03792 [Listeria monocytogenes HPB2262], g... gi\|217964272, gi... - gi\|217964272\|ref\|YP_002349950.1\| universal stress protein family [Listeria monocytogenes HCC23], gi\|... gi\|254824361 - gi\|254824361\|ref\|ZP_05229362.1\| hypothetical protein LmonFS_04309 [Listeria monocytogenes FSL J1-194... gi\|224499763 - gi\|224499763\|ref\|ZP_03668112.1\| universal stress protein family [Listeria monocytogenes Finland 1988... gi\|225876643, gi... - gi\|226224181\|ref\|YP_002758288.1\| hypothetical protein Lm4b_01591 [Listeria monocytogenes Clip81459],... gi\|254880169 - gi\|254880169\|ref\|ZP_05252879.1\| hypothetical protein LmonFSL_13301 [Listeria monocytogenes FSL J2-07... gi\|254852203 - gi\|254852203\|ref\|ZP_05241551.1\| hypothetical protein LmonoFSL_02469 [Listeria monocytogenes FSL R2-5...	140.0	[0..4]	[152..5]
gi\|126941397, gi... - gi\|254898253\|ref\|ZP_05258177.1\| hypothetical protein LmonJ_00520 [Listeria monocytogenes J0161], gi\|... gi\|153196784, gi... - gi\|254831981\|ref\|ZP_05236636.1\| hypothetical protein Lmon1_11530 [Listeria monocytogenes 10403S], gi... gi\|153191016, gi... - gi\|254912254\|ref\|ZP_05262266.1\| hypothetical protein LmonJ2_05610 [Listeria monocytogenes J2818], gi... gi\|153174741, gi... - gi\|254828185\|ref\|ZP_05232872.1\| hypothetical protein LmonocytogeFSL_06967 [Listeria monocytogenes FS... gi\|133733096, gi... - gi\|254936581\|ref\|ZP_05268278.1\| hypothetical protein LmonF6_05600 [Listeria monocytogenes F6900], gi... gi\|47096793, gi\|... - gi\|47096793\|ref\|ZP_00234375.1\| universal stress protein family [Listeria monocytogenes str. 1/2a F68... gi\|224501480 - gi\|224501480\|ref\|ZP_03669787.1\| hypothetical protein LmonFR_03017 [Listeria monocytogenes FSL R2-561... gi\|16803620 - gi\|16803620\|ref\|NP_465105.1\| hypothetical protein lmo1580 [Listeria monocytogenes EGD-e] gi\|255017151 - gi\|255017151\|ref\|ZP_05289277.1\| hypothetical protein LmonF_04043 [Listeria monocytogenes FSL F2-515] gi\|255027900 - gi\|255027900\|ref\|ZP_05299886.1\| hypothetical protein LmonocytFSL_18716 [Listeria monocytogenes FSL J... gi\|25514930, gi\|... - pir\|\|AD1272 hypothetical protein lmo1580 [imported] - Listeria monocytogenes (strain EGD-e), gi\|1641... gi\|255028540 - gi\|255028540\|ref\|ZP_05300491.1\| hypothetical protein LmonL_03836 [Listeria monocytogenes LO28]	140.0	[0..4]	[148..5]
gi\|52140879, gi\|... - gi\|52140879\|ref\|YP_085948.1\| universal stress protein [Bacillus cereus E33L], gi\|51974348\|gb\|AAU1589...	140.0	[0..4]	[151..5]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITYKNILIA VDGSHEAEWA FNRAVGVAKR NDAKLTIVNV IDSRTYSSYE VYDAQFTEKS  60
   61 KHFAEELLNG YKEVATNAGV KDVETRLEFG SPKSIIPKKL AHEINADLIM SGTSGLNAVE 120
  121 RFIVGSVSES IVRHAPCDVL VVRTEELPAD FQPQVATTQL REKYQN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1mjhA
Description:	"Hypothetical" protein MJ0577
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.432879758487135	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: