YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229369669, gi...
Organism:	Vibrio cholerae MJ-1236
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229369669, gi....

Description	E-value	Query Range	Subject Range
gi\|28805412 - gi\|28805412\|dbj\|BAC58692.1\| conserved hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi\|149746312, gi... - gi\|153840092\|ref\|ZP_01992759.1\| esterase YqiA [Vibrio parahaemolyticus AQ3810], gi\|149746312\|gb\|EDM5... gi\|28897203, gi\|... - gi\|28897203\|ref\|NP_796808.1\| esterase YqiA [Vibrio parahaemolyticus RIMD 2210633], gi\|28805412\|dbj\|B...	150.0	[0..3]	[195..2]
gi\|75814079, gi\|... - gi\|75814079\|ref\|ZP_00744725.1\| COG3150: Predicted esterase [Vibrio cholerae V52], gi\|121730251\|ref\|Z... gi\|229335435, gi... - gi\|229527038\|ref\|ZP_04416433.1\| hypothetical protein VCG_000104 [Vibrio cholerae 12129(1)], gi\|22933... gi\|75827697, gi\|... - gi\|75827697\|ref\|ZP_00757132.1\| COG3150: Predicted esterase [Vibrio cholerae O395], gi\|227118874\|ref\|... gi\|229337998, gi... - gi\|229524417\|ref\|ZP_04413822.1\| hypothetical protein VCA_002009 [Vibrio cholerae bv. albensis VL426]... gi\|148873415, gi... - gi\|153831109\|ref\|ZP_01983776.1\| conserved hypothetical protein [Vibrio cholerae 623-39], gi\|14887341... gi\|153827247, gi... - gi\|153827247\|ref\|ZP_01979914.1\| conserved hypothetical protein [Vibrio cholerae MZO-2], gi\|149738861... gi\|229521259, gi... - gi\|229521259\|ref\|ZP_04410679.1\| hypothetical protein VIF_001787 [Vibrio cholerae TM 11079-80], gi\|22... tr\|D7HEJ9\|D7HEJ9... - Putative uncharacterized protein OS=Vibrio cholerae RC385 GN=VCRC385_03433 PE=4 SV=1	145.0	[0..1]	[195..1]
gi\|91228379, gi\|... - gi\|91228379\|ref\|ZP_01262306.1\| hypothetical protein V12G01_12410 [Vibrio alginolyticus 12G01], gi\|91...	144.0	[0..3]	[195..2]
gi\|86148730, gi\|... - gi\|86148730\|ref\|ZP_01067005.1\| hypothetical protein MED222_16798 [Vibrio sp. MED222], gi\|85833479\|gb...	143.0	[0..4]	[195..10]
gi\|90411891, gi\|... - gi\|90411891\|ref\|ZP_01219899.1\| hypothetical protein P3TCK_01654 [Photobacterium profundum 3TCK], gi\|...	142.0	[0..5]	[195..2]
gi\|27360185, gi\|... - gi\|27364067\|ref\|NP_759595.1\| esterase YqiA [Vibrio vulnificus CMCP6], gi\|27360185\|gb\|AAO09122.1\|AE01...	139.0	[0..8]	[195..9]
gi\|37197512, gi\|... - gi\|37678771\|ref\|NP_933380.1\| predicted esterase [Vibrio vulnificus YJ016], gi\|37197512\|dbj\|BAC93351....	138.0	[0..8]	[195..13]
gi\|54307667, gi\|... - gi\|54307667\|ref\|YP_128687.1\| hypothetical protein PBPRA0454 [Photobacterium profundum SS9], gi\|46912...	137.0	[0..8]	[195..1]
gi\|59480937, gi\|... - gi\|59712836\|ref\|YP_205612.1\| esterase YqiA [Vibrio fischeri ES114], gi\|59480937\|gb\|AAW86724.1\| predi...	135.0	[0..8]	[195..7]
gi\|16761957 - gi\|16761957\|ref\|NP_457574.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Typhi str. C... gi\|62129329, gi\|... - gi\|62181696\|ref\|YP_218113.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Choleraesuis... gi\|25371476, gi\|... - gi\|25371476\|pir\|\|AF0889 conserved hypothetical protein STY3360 [imported] - Salmonella enterica subs... gi\|56415123, gi\|... - gi\|56415123\|ref\|YP_152198.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Paratyphi A ... gi\|29139078, gi\|... - gi\|29143444\|ref\|NP_806786.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Typhi str. T... gi\|194458111, gi... - gi\|194471747\|ref\|ZP_03077731.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Kentucky ... gi\|194406182, gi... - gi\|194447878\|ref\|YP_002047179.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Heidelbe... gi\|194404889, gi... - gi\|194446226\|ref\|YP_002042449.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Newport ... gi\|205343553, gi... - gi\|205343553\|gb\|EDZ30317.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Weltevreden s... gi\|198243301, gi... - gi\|198243301\|ref\|YP_002217162.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Dublin s... gi\|197364052, gi... - gi\|197364052\|ref\|YP_002143689.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Paratyph... gi\|197263779, gi... - gi\|197263779\|ref\|ZP_03163853.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Saintpaul... gi\|194736103, gi... - gi\|194736103\|ref\|YP_002116137.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Schwarze... gi\|205333807, gi... - gi\|205333807\|gb\|EDZ20571.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Kentucky str.... gi\|205331190, gi... - gi\|205331190\|gb\|EDZ17954.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- ... gi\|205323267, gi... - gi\|205323267\|gb\|EDZ11106.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Saintpaul str... gi\|161616171, gi... - gi\|161616171\|ref\|YP_001590136.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Paratyph... gi\|238909983 - gi\|238909983\|ref\|ZP_04653820.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Tennessee... gi\|168463610, gi... - gi\|195633556\|gb\|EDX51970.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Newport str. ... gi\|205348595, gi... - gi\|205348595\|gb\|EDZ35226.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Hadar str. RI... gi\|168243008, gi... - gi\|205337736\|gb\|EDZ24500.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Heidelberg st... gi\|197289028, gi... - gi\|197289028\|gb\|EDY28399.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Schwarzengrun... gi\|224584983, gi... - gi\|224584983\|ref\|YP_002638782.1\| hypothetical protein SPC_3256 [Salmonella enterica subsp. enterica ... gi\|214001843 - gi\|214001843\|ref\|ZP_03412578.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Typhi str... lcl\|NC_016856.1_... - [gene=yqiA] [protein=esterase YqiA] [protein_id=YP_005239354.1] [location=complement(3364134..336471... gi\|206710244, gi... - gi\|207858441\|ref\|YP_002245092.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Enteriti... gi\|205273879, gi... - gi\|205354098\|ref\|YP_002227899.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Gallinar... gi\|204928245, gi... - gi\|204928245\|ref\|ZP_03219445.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Javiana s... gi\|199604693, gi... - gi\|200387595\|ref\|ZP_03214207.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Virchow s... gi\|213645891 - gi\|213645891\|ref\|ZP_03375944.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213579855 - gi\|213579855\|ref\|ZP_03361681.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213424344 - gi\|213424344\|ref\|ZP_03357168.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213052525 - gi\|213052525\|ref\|ZP_03345403.1\| esterase YqiA [Salmonella enterica subsp. enterica serovar Typhi str...	135.0	[0..7]	[195..3]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTARPALLLY IHGFNSSPLS HKAQVMQQYC QQHRPDIKVV VPKLPSFPAQ AAQHLLSVVE  60
   61 QYRAQYRIGL VGSSLGGYLS TWLNAQFGFR SVLINPAVKP YELLADFLGE QVNPYTQEHY 120
  121 VLEACHIDEL KALDTPVLKQ PSDFWLLQQK GDEVLDYRQA VEKYQAAKLT VEEGGDHSFV 180
  181 DFERYPEQII HFLEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.30103
Match:	2d0dA
Description:	No description for 2d0dA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits