YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229507505, gi...
Organism:	Vibrio cholerae BX 330286
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229507505, gi....

Description	E-value	Query Range	Subject Range
gi\|75853552, gi\|... - gi\|75853552\|ref\|ZP_00761373.1\| COG0494: NTP pyrophosphohydrolases including oxidative damage repair ...	171.0	[0..1]	[207..1]
gi\|86148727, gi\|... - gi\|86148727\|ref\|ZP_01067002.1\| MutT/nudix family protein [Vibrio sp. MED222], gi\|85833476\|gb\|EAQ5165...	169.0	[0..1]	[207..1]
gi\|59480940, gi\|... - gi\|59712839\|ref\|YP_205615.1\| ADP-ribose pyrophosphatase [Vibrio fischeri ES114], gi\|59480940\|gb\|AAW8...	167.0	[0..11]	[207..13]
gi\|29165301 - gi\|29165301\|gb\|AAO65601.1\| MutT [Vibrio vulnificus]	167.0	[0..1]	[207..1]
gi\|91188075, gi\|... - gi\|91228376\|ref\|ZP_01262303.1\| MutT/nudix family protein [Vibrio alginolyticus 12G01], gi\|91188075\|g...	166.0	[0..1]	[207..1]
gi\|27360188, gi\|... - gi\|27364070\|ref\|NP_759598.1\| MutT/nudix family protein [Vibrio vulnificus CMCP6], gi\|27360188\|gb\|AAO...	166.0	[0..1]	[207..1]
gi\|37678768, gi\|... - gi\|37678768\|ref\|NP_933377.1\| MutT/nudix family protein [Vibrio vulnificus YJ016], gi\|37197509\|dbj\|BA...	166.0	[0..1]	[207..5]
gi\|66043814, gi\|... - gi\|66043814\|ref\|YP_233655.1\| hypothetical protein Psyr_0547 [Pseudomonas syringae pv. syringae B728a...	165.0	[0..3]	[207..9]
gi\|153840370, gi... - gi\|153840370\|ref\|ZP_01993037.1\| ADP-ribose pyrophosphatase [Vibrio parahaemolyticus AQ3810], gi\|1497... gi\|28805409 - gi\|28805409\|dbj\|BAC58689.1\| MutT/nudix family protein [Vibrio parahaemolyticus RIMD 2210633] gi\|28897200, gi\|... - gi\|28897200\|ref\|NP_796805.1\| MutT/nudix family protein [Vibrio parahaemolyticus RIMD 2210633], gi\|28...	164.0	[0..1]	[207..1]
gi\|195633661, gi... - gi\|195633661\|gb\|EDX52075.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar New... gi\|168262857, gi... - gi\|205348594\|gb\|EDZ35225.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Had... gi\|205337887, gi... - gi\|205337887\|gb\|EDZ24651.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Hei... gi\|197288969, gi... - gi\|197288969\|gb\|EDY28340.1\| hydrolase, NUDIX family protein [Salmonella enterica subsp. enterica ser... gi\|62129332, gi\|... - gi\|62181699\|ref\|YP_218116.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica se... gi\|205333872, gi... - gi\|205333872\|gb\|EDZ20636.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Ken... gi\|205323325, gi... - gi\|205323325\|gb\|EDZ11164.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Sai... gi\|238909986 - gi\|238909986\|ref\|ZP_04653823.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enterica... gi\|224584986, gi... - gi\|224584986\|ref\|YP_002638785.1\| hypothetical protein SPC_3259 [Salmonella enterica subsp. enterica ... gi\|204928165, gi... - gi\|204928165\|ref\|ZP_03219365.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar... gi\|199605157, gi... - gi\|200388059\|ref\|ZP_03214671.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar... gi\|197249833, gi... - gi\|197249833\|ref\|YP_002148112.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serova... gi\|194710227, gi... - gi\|194734725\|ref\|YP_002116140.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serova... gi\|194469990, gi... - gi\|194469990\|ref\|ZP_03075974.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar... gi\|194450031, gi... - gi\|194450031\|ref\|YP_002047182.1\| ADP-ribose pyrophosphatase NudF [Salmonella enterica subsp. enteric... gi\|194442306, gi... - gi\|194442306\|ref\|YP_002042452.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serova... gi\|168819752, gi... - gi\|205343414\|gb\|EDZ30178.1\| hydrolase, NUDIX family [Salmonella enterica subsp. enterica serovar Wel...	164.0	[0..1]	[208..1]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDANQQPVS FNKKDVEILN KETLFKGFFR MVKYRFKHKR FAGGWSEPVE REMFERGHAA  60
   61 AMLPYDPIRD QVVIIEQIRV GALEHAQPWQ LEIVAGVIDT DESAEQVVRR EAVEEAGLTV 120
  121 GRIEKITSYY PSSGGCSEKL DVFIGEVDCS QAGGIHGLDC EGEDIKVHVM SRTEAYQLVK 180
  181 DGRIENGASI IALQWLALNY QPLQQQWQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	1g0sA
Description:	ADP-ribose pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.49075808737475	bayes_pls_golite062009
hydrolase activity	1.0879699007552	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.859040726089354	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.859001295204634	bayes_pls_golite062009
pyrophosphatase activity	0.231401568856773	bayes_pls_golite062009
binding	0.165092558977235	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: