YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229697415, gi...
Organism:	Yersinia pestis biovar Orientalis str. PEXU2
Length:	935 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229697415, gi....

Description	E-value	Query Range	Subject Range
gi\|82543153, gi\|... - gi\|82543153\|ref\|YP_407100.1\| alpha-ketoglutarate decarboxylase [Shigella boydii Sb227], gi\|81244564\|...	0.0	[1..935]	[1..933]
gi\|24111998, gi\|... - gi\|24111998\|ref\|NP_706508.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 2a str. 301], gi\|2... gi\|30040356, gi\|... - gi\|30062111\|ref\|NP_836282.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 2a str. 2457T], gi...	0.0	[1..935]	[1..933]
gi\|193070663, gi... - gi\|75234496\|ref\|ZP_00718843.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com...	0.0	[1..935]	[1..933]
EG10979 - 2-oxoglutarate decarboxylase, thiamine triphosphate-binding / 2-oxoglutarate dehydrogenase, E1 compo... gi\|217321828, gi... - gi\|217325607\|ref\|ZP_03441691.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|218360020, gi... - gi\|218553252\|ref\|YP_002386165.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli IAI1], ... gi\|218364410, gi... - gi\|218557641\|ref\|YP_002390554.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli S88], g... gi\|218426083, gi... - gi\|218688519\|ref\|YP_002396731.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli ED1a], ... EG10979 - 2-oxoglutarate decarboxylase, thiamine triphosphate-binding / 2-oxoglutarate dehydrogenase, E1 compo... gi\|218350881, gi... - gi\|218694149\|ref\|YP_002401816.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli 55989],... gi\|218699080, gi... - gi\|218699080\|ref\|YP_002406709.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli IAI39],... ODO1_ECOL6 - 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / U... gi\|218704042, gi... - gi\|218704042\|ref\|YP_002411561.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli UMN026]... ODO1_ECO57 - 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O157:H7 GN=sucA PE=3 SV=1 gi\|75175924, gi\|... - gi\|75175924\|ref\|ZP_00696111.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|75189747, gi\|... - gi\|75189747\|ref\|ZP_00703014.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|157160205, gi... - gi\|75194884\|ref\|ZP_00704954.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|194412889, gi... - gi\|75209706\|ref\|ZP_00709914.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|75229642, gi\|... - gi\|75229642\|ref\|ZP_00716179.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|191174047, gi... - gi\|75237356\|ref\|ZP_00721398.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|75256435, gi\|... - gi\|75256435\|ref\|ZP_00728093.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|188495881, gi... - gi\|75511613\|ref\|ZP_00734264.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|254591272, gi... - gi\|254791872\|ref\|YP_003076709.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli O... gi\|253972696, gi... - gi\|254160795\|ref\|YP_003043903.1\| alpha-ketoglutarate decarboxylase [Escherichia coli B str. REL606],... ODO1_ECOL6 - 2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O6 GN=sucA PE=3 SV=1 gi\|253325348, gi... - gi\|254287583\|ref\|YP_003053331.1\| alpha-ketoglutarate decarboxylase [Escherichia coli BL21(DE3)], gi\|... gi\|83585343, gi\|... - gi\|83585343\|ref\|ZP_00923990.1\| COG0567: 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) com... gi\|168750657, gi... - gi\|188015214\|gb\|EDU53336.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|242376487, gi... - gi\|251784214\|ref\|YP_002998518.1\| hypothetical protein B21_00674 [Escherichia coli BL21], gi\|24237648... gi\|238859780, gi... - gi\|238899990\|ref\|YP_002925786.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli B... gi\|237707312, gi... - gi\|237707312\|ref\|ZP_04537793.1\| oxoglutarate dehydrogenase [Escherichia sp. 3_2_53FAA], gi\|226898522... gi\|227884308, gi... - gi\|227884308\|ref\|ZP_04002113.1\| oxoglutarate dehydrogenase (succinyl-transferring) [Escherichia coli... gi\|170080392, gi... - gi\|170080392\|ref\|YP_001729712.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli s... gi\|170519246, gi... - gi\|170681528\|ref\|YP_001742826.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [E... gi\|195939067 - gi\|195939067\|ref\|ZP_03084449.1\| alpha-ketoglutarate decarboxylase [Escherichia coli O157:H7 str. EC4... gi\|208726152, gi... - gi\|208806351\|ref\|ZP_03248688.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|208816323, gi... - gi\|208816323\|ref\|ZP_03257502.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|208737127, gi... - gi\|208822934\|ref\|ZP_03263252.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Es... gi\|115512043, gi... - gi\|117622919\|ref\|YP_851832.1\| alpha-ketoglutarate decarboxylase [Escherichia coli APEC O1], gi\|11551... gi\|209399395, gi... - gi\|209399395\|ref\|YP_002269349.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [E... ODO1_ECOLI - 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) (Alpha-ketoglutarate dehydrogenase) - Escheri... gi\|124501513, gi... - gi\|124526819\|ref\|ZP_01698701.1\| 2-oxoglutarate dehydrogenase, E1 subunit [Escherichia coli B], gi\|12... gi\|209917976, gi... - gi\|209917976\|ref\|YP_002292060.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli SE11], ... gi\|89107583, gi\|... - gi\|89107583\|ref\|AP_001363.1\| 2-oxoglutarate decarboxylase, thiamin-requiring [Escherichia coli str. ... gi\|189355772, gi... - gi\|189355772\|gb\|EDU74191.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|91209759, gi\|... - gi\|91209759\|ref\|YP_539745.1\| alpha-ketoglutarate decarboxylase [Escherichia coli UTI89], gi\|91071333... gi\|168764007, gi... - gi\|189365909\|gb\|EDU84325.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|13360209, gi\|... - gi\|15830005\|ref\|NP_308778.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli O157:H7 str... gi\|189363590, gi... - gi\|189363590\|gb\|EDU82009.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|110342526, gi... - gi\|110640934\|ref\|YP_668662.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli 536], gi\|1... gi\|187767229, gi... - gi\|187767229\|gb\|EDU31073.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|168779209, gi... - gi\|189002698\|gb\|EDU71684.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|168786879, gi... - gi\|189372978\|gb\|EDU91394.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|189376465, gi... - gi\|189376465\|gb\|EDU94881.1\| oxoglutarate dehydrogenase (succinyl-transferring), E1 component [Escher... gi\|170020930, gi... - gi\|170020930\|ref\|YP_001725884.1\| 2-oxoglutarate dehydrogenase E1 component [Escherichia coli ATCC 87...	0.0	[1..935]	[1..933]
gi\|81240142, gi\|... - gi\|82775994\|ref\|YP_402341.1\| alpha-ketoglutarate decarboxylase [Shigella dysenteriae Sd197], gi\|8124...	0.0	[1..935]	[1..933]
gi\|37525384, gi\|... - gi\|37525384\|ref\|NP_928728.1\| alpha-ketoglutarate decarboxylase [Photorhabdus luminescens subsp. laum...	0.0	[1..935]	[1..935]
gi\|110804647, gi... - gi\|110804647\|ref\|YP_688167.1\| alpha-ketoglutarate decarboxylase [Shigella flexneri 5 str. 8401], gi\|...	0.0	[1..935]	[1..933]
gi\|43019 - gi\|43019\|emb\|CAA25280.1\| unnamed protein product [Escherichia coli] gi\|146201 - gi\|146201\|gb\|AAA23897.1\| 2-oxoglutarate dehydrogenase [Escherichia coli K12]	0.0	[1..935]	[1..933]
gi\|15800430, gi\|... - gi\|15800430\|ref\|NP_286442.1\| alpha-ketoglutarate decarboxylase [Escherichia coli O157:H7 EDL933], gi... gi\|25284469 - gi\|25284469\|pir\|\|F85573 hypothetical protein sucA [imported] - Escherichia coli (strain O157:H7, su...	0.0	[1..935]	[1..933]
gi\|54308241, gi\|... - gi\|54308241\|ref\|YP_129261.1\| 2-oxoglutarate dehydrogenase E1 component [Photobacterium profundum SS9...	0.0	[1..934]	[1..935]

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Predicted Domain #1

Region A:
Residues: [1-935]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNGAMKAWL DSSYLAGANQ SYIEQLYEDF LTDPGSVDDS WRSIFQQLPT TGVKPDQLHS  60
   61 QTREYFRRLA KDSTRYNSSI NDPDIDAKQV KVLQLINAFR FRGHQHANLD PLGLWKQESV 120
  121 PDLDPSYHNL TEADFQNTFN VGSFAIGKET MKLADLYAAL KQTYCGSVGA EYMHITNTEE 180
  181 KRWIQQRIES VVGKPTFSDA EKRRFLSELT AAEGLERYLG AKFPGAKRFS LEGGDSLVTM 240
  241 LKEMIRHAGK NGTREVVLGM AHRGRLNVLI NVLGKKPEDL FDEFAGKHKE HLGTGDVKYH 300
  301 QGFSSDVETE GGLVHLALAF NPSHLEIVSP VVIGSVRARR DRLDEARSNM VLPITIHGDA 360
  361 AITGQGVVQE TLNMSQARGY EVGGTVRIVI NNQIGFTTSN PLDARSTQYC TDIAKMVQAP 420
  421 IFHVNADDPE AVAFVTRLAL DFRNTFKRDV MIDLVCYRRH GHNEADEPSA TQPVMYQKIK 480
  481 KHPTPRKIYA DKLIEQNIAS LEDATEMVNL YRDALDHGDC VVEEWRPMNL QSFTWSPYLN 540
  541 HEWDEAYPSK VEMKRLQELA RRISSAPEAI EMQSRVAKIY SDRALMASGE KPFDWGGAET 600
  601 LAYATLVDEG IPIRLSGEDA GRGTFFHRHA VIHNQKNGSV YVPLSNIHSG QGDFQVWDSV 660
  661 LSEEAVLAFE YGYATAEPRT LTIWEAQFGD FANGAQVVID QFISSGEQKW GRMCGLVMLL 720
  721 PHGYEGQGPE HSSARLERYL QLCAEQNMQV CIPSTPAQVY HMIRRQALRG MRRPLIVMSP 780
  781 KSLLRHPLAT SSLDELANGS FLPAIGEIDE LDPKGIKRVV MCSGKVYYDL LEQRRKNGQT 840
  841 DVAIVRIEQL YPFPHQAVQS VLEQYAHVHD FVWCQEEPLN QGAWYCSQHN FREVIPFGAS 900
  901 LRYAGRPASA SPAVGYLSVH QKQQQALVND ALNVE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2jgdB
Description:	No description for 2jgdB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits