YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227010151, gi...
Organism:	Vibrio cholerae M66-2
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227010151, gi....

Description	E-value	Query Range	Subject Range
gi\|84377173, gi\|... - gi\|84388106\|ref\|ZP_00991002.1\| flagellar protein FliS [Vibrio splendidus 12B01], gi\|84377173\|gb\|EAP9...	180.0	[0..1]	[136..1]
gi\|218321837, gi... - gi\|218708818\|ref\|YP_002416439.1\| flagellar protein FliS [Vibrio splendidus LGP32], gi\|218321837\|emb\|... gi\|85836088, gi\|... - gi\|86146141\|ref\|ZP_01064467.1\| flagellar protein FliS [Vibrio sp. MED222], gi\|85836088\|gb\|EAQ54220.1...	180.0	[0..1]	[136..1]
gi\|28899028, gi\|... - gi\|28899028\|ref\|NP_798633.1\| flagellar protein FliS [Vibrio parahaemolyticus RIMD 2210633], gi\|28807... gi\|28807247, gi\|... - gi\|28807247\|dbj\|BAC60517.1\| polar flagellar protein FlaJ [Vibrio parahaemolyticus RIMD 2210633], pir... gi\|149749711, gi... - gi\|153836938\|ref\|ZP_01989605.1\| flagellar protein FliS [Vibrio parahaemolyticus AQ3810], gi\|14974971... gi\|153834159, gi... - gi\|153834159\|ref\|ZP_01986826.1\| flagellar protein FliS [Vibrio harveyi HY01], gi\|148869529\|gb\|EDL685...	179.0	[0..1]	[136..1]
gi\|37199420, gi\|... - gi\|37680671\|ref\|NP_935280.1\| flagellar protein FliS [Vibrio vulnificus YJ016], gi\|37199420\|dbj\|BAC95... gi\|27361422, gi\|... - gi\|27365275\|ref\|NP_760803.1\| flagellar protein FliS [Vibrio vulnificus CMCP6], gi\|27361422\|gb\|AAO103...	177.0	[0..1]	[136..1]
gi\|75856759, gi\|... - gi\|75856759\|ref\|ZP_00764382.1\| COG1516: Flagellin-specific chaperone FliS [Vibrio sp. Ex25], gi\|1161...	176.0	[0..1]	[136..1]
gi\|149287334 - gi\|149287334\|gb\|ABR23526.1\| FliS [Vibrio alginolyticus] gi\|91223539, gi\|... - gi\|91223539\|ref\|ZP_01258804.1\| flagellar protein FliS [Vibrio alginolyticus 12G01], gi\|91191625\|gb\|E...	174.0	[0..1]	[136..1]
gi\|59480566, gi\|... - gi\|59712465\|ref\|YP_205241.1\| flagellar protein FliS [Vibrio fischeri ES114], gi\|59480566\|gb\|AAW86353... gi\|31414755 - gi\|31414755\|gb\|AAN38967.1\| flagellar protein FlaJ [Vibrio fischeri] gi\|197335486, gi... - gi\|197335486\|ref\|YP_002156683.1\| flagellar protein FliS [Vibrio fischeri MJ11], gi\|197316976\|gb\|ACH6...	174.0	[0..1]	[136..1]
gi\|113969620, gi... - gi\|82495234\|ref\|ZP_00880811.1\| Flagellar protein FliS [Shewanella sp. MR-4], gi\|82406737\|gb\|EAP47400...	168.0	[0..1]	[131..1]
gi\|90328231, gi\|... - gi\|90411018\|ref\|ZP_01219032.1\| flagellar protein FliS [Photobacterium profundum 3TCK], gi\|90328231\|g...	168.0	[0..1]	[134..3]
gi\|46912536, gi\|... - gi\|54308110\|ref\|YP_129130.1\| flagellar protein FliS [Photobacterium profundum SS9], gi\|46912536\|emb\|...	167.0	[0..1]	[133..3]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGSLQAYKK VSVDSQLSAA SPHKIVQMLM AGAIERLIQG KAAMQQGNIP VKGERLGKAL  60
   61 DIIISLRSCL SMEDGGDIAK NLDQLYDFMV NQITQANHKN DPQMLDDVIE IIREIKSAWD 120
  121 QIPPEYHNLT AAEVGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	1vh6A
Description:	Crystal structure of a flagellar protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.31438572337508	bayes_pls_golite062009
protein binding	0.977368420595996	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: