YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229690896, gi...
Organism:	Yersinia pestis biovar Orientalis str. India 195
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229690896, gi....

Description	E-value	Query Range	Subject Range
gi\|71906578, gi\|... - gi\|71906578\|ref\|YP_284165.1\| carbamoyl phosphate synthase large subunit [Dechloromonas aromatica RCB...	1.0E-66	[2..313]	[554..866]
gi\|53760027, gi\|... - gi\|91775132\|ref\|YP_544888.1\| carbamoyl-phosphate synthase large subunit [Methylobacillus flagellatus...	1.0E-65	[3..317]	[555..871]
gi\|33568032, gi\|... - gi\|33600433\|ref\|NP_887993.1\| carbamoyl phosphate synthase large subunit [Bordetella bronchiseptica R...	3.0E-65	[2..313]	[561..873]
gi\|33565981 - gi\|33565981\|emb\|CAE36532.1\| carbamoyl-phosphate synthase large chain [Bordetella parapertussis] gi\|33595902 - gi\|33595902\|ref\|NP_883545.1\| carbamoyl phosphate synthase large subunit [Bordetella parapertussis 12...	4.0E-65	[2..313]	[561..873]
gi\|70734326, gi\|... - gi\|70734326\|ref\|YP_257966.1\| carbamoyl phosphate synthase large subunit [Pseudomonas fluorescens Pf-...	1.0E-64	[3..313]	[560..871]
gi\|33592551, gi\|... - gi\|33592551\|ref\|NP_880195.1\| carbamoyl phosphate synthase large subunit [Bordetella pertussis Tohama...	2.0E-64	[2..313]	[561..873]
gi\|114590613 - gi\|114590613\|ref\|XP_516898.2\| PREDICTED: methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Pan trogl...	2.0E-64	[14..312]	[185..496]
gi\|78363510, gi\|... - gi\|78485224\|ref\|YP_391149.1\| carbamoyl-phosphate synthase, large subunit [Thiomicrospira crunogena X...	3.0E-64	[3..317]	[563..879]
CARB_PASMU - Carbamoyl-phosphate synthase large chain OS=Pasteurella multocida (strain Pm70) GN=carB PE=3 SV=1 CARB_PASMU - Carbamoyl-phosphate synthase large chain OS=Pasteurella multocida GN=carB PE=3 SV=1	3.0E-64	[2..317]	[554..871]
gi\|114333447, gi... - gi\|69954117\|ref\|ZP_00640933.1\| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent [She...	4.0E-64	[3..313]	[560..871]

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Predicted Domain #1

Region A:
Residues: [1-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKLGIVMDP ISSINIKKDT SFAMLLEAQR RGWELHYMEM GDLYMRGGDG RARTRRLNVK  60
   61 QDKDNWFSFG AEQDLPLYDL DVILMRKDPP FDTEFIYATY ILERAEDKGT LVVNKPQSLR 120
  121 DCNEKLFTAW FPELTPDTLV SRSKDHIRKF HQEHGDIILK PLDGMGGTSI FRVKQDDPNL 180
  181 SVIIETLTEL SSRFCMAQNF LPAIKEGDKR VLVVDGEPVP YCLARIPAQG ETRGNLAAGG 240
  241 RGEARPLSES DWEIARTVAP ILKQKGLIFV GLDIIGDRLT EINVTSPTCV REIEAAFPEI 300
  301 SITGMLMDAI ERRLADKKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.0
Match:	1gsaA
Description:	STRUCTURE OF GLUTATHIONE SYNTHETASE COMPLEXED WITH ADP AND GLUTATHIONE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glutathione synthase activity	3.18460876432532	bayes_pls_golite062009
catalytic activity	2.5009559386228	bayes_pls_golite062009
glutathione binding	2.38364045371863	bayes_pls_golite062009
ligase activity	2.15409885945916	bayes_pls_golite062009
succinate-CoA ligase activity	1.52785506428706	bayes_pls_golite062009
ligase activity, forming carbon-sulfur bonds	0.935432886482705	bayes_pls_golite062009
acid-amino acid ligase activity	0.599203164789408	bayes_pls_golite062009
CoA-ligase activity	0.51228075142462	bayes_pls_golite062009
acid-thiol ligase activity	0.448084116680826	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	0.351267830197198	bayes_pls_golite062009
succinate-CoA ligase (ADP-forming) activity	0.324506681366243	bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds	0.239594107637156	bayes_pls_golite062009
CoA carboxylase activity	0.185924207432397	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: