YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229607229, gi...
Organism:	Vibrio cholerae MJ-1236
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229607229, gi....

Description	E-value	Query Range	Subject Range
gi\|28897551, gi\|... - gi\|28897551\|ref\|NP_797156.1\| flagellar basal body rod modification protein [Vibrio parahaemolyticus ... gi\|5361007, gi\|2... - gi\|5361007\|gb\|AAD42914.1\|U12817_8 polar flagellar FlgD homolog [Vibrio parahaemolyticus], gi\|2880576... gi\|149746796, gi... - gi\|153839686\|ref\|ZP_01992353.1\| flagellar basal body rod modification protein [Vibrio parahaemolytic...	248.0	[0..1]	[235..1]
gi\|27359822, gi\|... - gi\|27363706\|ref\|NP_759234.1\| flagellar basal body rod modification protein [Vibrio vulnificus CMCP6]... gi\|37197888, gi\|... - gi\|37679146\|ref\|NP_933755.1\| flagellar basal body rod modification protein [Vibrio vulnificus YJ016]...	248.0	[0..1]	[235..1]
gi\|24459276 - gi\|24459276\|gb\|AAL86629.1\| FlgD [Vibrio fischeri] gi\|197317217, gi... - gi\|197335727\|ref\|YP_002156701.1\| flagellar basal body rod modification protein [Vibrio fischeri MJ11... gi\|59480583, gi\|... - gi\|59712482\|ref\|YP_205258.1\| flagellar basal body rod modification protein [Vibrio fischeri ES114], ...	247.0	[0..1]	[235..1]
gi\|91225872, gi\|... - gi\|91225872\|ref\|ZP_01260841.1\| flagellar basal-body rod modification protein D [Vibrio alginolyticus...	245.0	[0..1]	[235..1]
gi\|86146156, gi\|... - gi\|86146156\|ref\|ZP_01064482.1\| flagellar basal body rod modification protein [Vibrio sp. MED222], gi... gi\|218321822, gi... - gi\|218708803\|ref\|YP_002416424.1\| flagellar basal body rod modification protein [Vibrio splendidus LG...	244.0	[0..1]	[235..1]
gi\|75855313, gi\|... - gi\|75855313\|ref\|ZP_00762968.1\| COG1843: Flagellar hook capping protein [Vibrio sp. Ex25], gi\|2542301...	244.0	[0..1]	[235..1]
gi\|84377157, gi\|... - gi\|84388090\|ref\|ZP_00990986.1\| flagellar basal body rod modification protein [Vibrio splendidus 12B0...	240.0	[0..1]	[235..1]
gi\|46912522, gi\|... - gi\|54308096\|ref\|YP_129116.1\| flagellar basal body rod modification protein [Photobacterium profundum...	239.0	[0..1]	[235..1]
gi\|90328217, gi\|... - gi\|90411004\|ref\|ZP_01219018.1\| flagellar basal body rod modification protein [Photobacterium profund...	236.0	[0..1]	[234..1]
gi\|90579908, gi\|... - gi\|90579908\|ref\|ZP_01235716.1\| flagellar basal body rod modification protein [Vibrio angustum S14], ...	216.0	[0..1]	[235..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVNNVGQS GLSYIDQLKA LQEQKKPDET TGQKSLKQED FLSLLTKQLA QQDPFKPVSN  60
   61 DQMIAQMASF ATVDGIGKMN TQFESLNSSM TSNQALQASS LVGRDVLVPG AAGMKKPDGG 120
  121 MAAMVKLPQS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.823909
Match:	PF03963.5
Description:	No description for PF03963.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [131-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IDNLFIRIEN EAGQLVRTFD VGAKSSGDNR VEWDGKDQNG NPLPGGKYKV KASGLLDGES  60
   61 KEFEVSTYAN VNSVLLGKGD GNVLLNLAGF DAPVRLAEVL EVGKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.69897
Match:	1xf1A
Description:	Structure of C5a peptidase- a key virulence factor from Streptococcus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits