YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229696401, gi...
Organism:	Yersinia pestis biovar Orientalis str. PEXU2
Length:	289 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229696401, gi....

Description	E-value	Query Range	Subject Range
gi\|7861553 - gi\|7861553\|dbj\|BAA95690.1\| phosphoribulokinase [Hydrogenophilus thermoluteolus]	7.0E-75	[1..289]	[1..290]
gi\|48765468 - ref\|ZP_00270018.1\| COG3954: Phosphoribulokinase [Rhodospirillum rubrum] gi\|83593739, gi\|... - gi\|83593739\|ref\|YP_427491.1\| phosphoribulokinase [Rhodospirillum rubrum ATCC 11170], gi\|83576653\|gb\|...	5.0E-74	[1..289]	[1..289]
gi\|22127829, gi\|... - gi\|22127829\|ref\|NP_671252.1\| phosphoribulokinase 1 [Yersinia pestis KIM], gi\|21960962\|gb\|AAM87503.1\|... gi\|45434893, gi\|... - gi\|45440038\|ref\|NP_991577.1\| phosphoribulokinase 1 [Yersinia pestis biovar Microtus str. 91001], gi\|...	5.0E-74	[1..289]	[13..301]
gi\|68525689, gi\|... - gi\|94310454\|ref\|YP_583664.1\| phosphoribulokinase/uridine kinase [Ralstonia metallidurans CH34], gi\|9...	4.0E-73	[1..289]	[1..290]
gi\|238792912, gi... - gi\|77978198\|ref\|ZP_00833630.1\| COG3954: Phosphoribulokinase [Yersinia intermedia ATCC 29909], gi\|238...	8.0E-73	[1..288]	[1..288]
gi\|125575, gi\|141910 - gi\|141910\|gb\|AAA21959.1\| phosphoribulokinase P, gi\|125575\|sp\|P19923.3\|KPPR2_RALEH RecName: Full=Phos... KPPR2_CUPNH - Phosphoribulokinase, chromosomal OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier... gi\|78200, gi\|125... - pir\|\|JQ0399 phosphoribulokinase (EC 2.7.1.19) [similarity] - Alcaligenes eutrophus, gi\|141910\|gb\|AA...	1.0E-72	[1..289]	[1..290]
gi\|121604884, gi... - gi\|84712542\|ref\|ZP_01020422.1\| phosphoribulokinase (phosphopentokinase) (PRK) [Polaromonas naphthale...	1.0E-72	[1..289]	[1..290]
gi\|238718899, gi... - gi\|77962712\|ref\|ZP_00826529.1\| COG3954: Phosphoribulokinase [Yersinia mollaretii ATCC 43969], gi\|238...	3.0E-72	[1..288]	[1..288]
gi\|238722962, gi... - gi\|77975016\|ref\|ZP_00830553.1\| COG3954: Phosphoribulokinase [Yersinia frederiksenii ATCC 33641], gi\|...	3.0E-72	[1..288]	[1..288]
KPPR1_CUPNH - Phosphoribulokinase, plasmid OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337... gi\|141907, gi\|125574 - gi\|141907\|gb\|AAA21957.1\| phosphoribulokinase P, gi\|125574\|sp\|P19924.3\|KPPR1_RALEH RecName: Full=Phos... gi\|32527420, gi\|... - pir\|\|JQ0400 phosphoribulokinase (EC 2.7.1.19) [similarity] - Alcaligenes eutrophus plasmid pHG1, gi...	5.0E-72	[1..289]	[1..290]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKHPVIAV TGSSGAGTTT TSLAFRKIFQ QLDIRAAQIE GDSFHRYTRP EMDAAIRKAR  60
   61 DQGRHISYFG PEANDFGQLE QSVAEYSKHG TGRSRKYLHT YDEAVPYNQI PGTFTPWEPL 120
  121 PEPTDVLFYE GLHGGVVTEH HDVAKHVDLL VGVVPIVNLE WIQKLVRDTG ERGHSREAVM 180
  181 DSVVRSMDDY INYITPQFSR THINFQRVPT VDTSNPFAAK AIPSLDESFV VIHFRGLDHI 240
  241 DFPYLLAMLQ GSFISNINTL VVPGGKMGLA MELIMAPLVQ QLLEGKQIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.30103
Match:	1a7jA
Description:	PHOSPHORIBULOKINASE FROM RHODOBACTER SPHEROIDES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
hydrolase activity	0.310795123901245	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: