YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229841910, gi...
Organism:	Yersinia pestis biovar Orientalis str. India 195
Length:	346 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229841910, gi....

Description	E-value	Query Range	Subject Range
gi\|238724200, gi... - gi\|77973796\|ref\|ZP_00829341.1\| COG0226: ABC-type phosphate transport system, periplasmic component [...	0.0	[1..346]	[1..346]
gi\|49613919, gi\|... - gi\|50123393\|ref\|YP_052560.1\| phosphate transporter subunit [Pectobacterium atrosepticum SCRI1043], g...	1.0E-99	[1..346]	[1..346]
gi\|2547078 - gi\|2547078\|dbj\|BAA22861.1\| phosphate-binding protein [Enterobacter cloacae]	5.0E-99	[1..346]	[1..346]
gi\|21304469 - gi\|21304469\|gb\|AAM45393.1\| phosphate-binding protein [Edwardsiella tarda]	6.0E-99	[1..346]	[1..346]
gi\|208813647, gi... - gi\|208813647\|ref\|ZP_03254976.1\| phosphate ABC transporter, periplasmic phosphate-binding protein Pst... gi\|208820833, gi... - gi\|208820833\|ref\|ZP_03261153.1\| phosphate ABC transporter, periplasmic phosphate-binding protein Pst... gi\|209400241, gi... - gi\|209400241\|ref\|YP_002273251.1\| phosphate ABC transporter, periplasmic phosphate-binding protein Ps... gi\|217324937, gi... - gi\|217324937\|ref\|ZP_03441021.1\| phosphate ABC transporter, periplasmic phosphate-binding protein Pst... gi\|15833918, gi\|... - gi\|15833918\|ref\|NP_312691.1\| PstS [Escherichia coli O157:H7], gi\|13364139\|dbj\|BAB38087.1\| phosphate-... gi\|189373420, gi... - gi\|189373420\|gb\|EDU91836.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|209753930, gi... - pir\|\|H86057 phosphate-binding periplasmic protein PstS [imported] - Escherichia coli (strain O157:H7... gi\|168798767, gi... - gi\|189378802\|gb\|EDU97218.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|195936350 - gi\|195936350\|ref\|ZP_03081732.1\| phosphate transporter subunit [Escherichia coli O157:H7 str. EC4024] gi\|12518575, gi\|... - gi\|15804321\|ref\|NP_290360.1\| phosphate transporter subunit [Escherichia coli O157:H7 EDL933], gi\|125... gi\|208727384, gi... - gi\|208807583\|ref\|ZP_03249920.1\| phosphate ABC transporter, periplasmic phosphate-binding protein Pst... gi\|168759919, gi... - gi\|189369943\|gb\|EDU88359.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|168766219, gi... - gi\|189364474\|gb\|EDU82893.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|168772232, gi... - gi\|187771542\|gb\|EDU35386.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|168779954, gi... - gi\|189002334\|gb\|EDU71320.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|188016996, gi... - gi\|188016996\|gb\|EDU55118.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|189359296, gi... - gi\|189359296\|gb\|EDU77715.1\| phosphate ABC transporter, periplasmic phosphate-binding protein PstS [E... gi\|254595126, gi... - gi\|254795726\|ref\|YP_003080563.1\| phosphate transporter subunit; periplasmic-binding component of ABC... gi\|15833918, gi\|... - gi\|15833918\|ref\|NP_312691.1\| phosphate ABC transporter periplasmic substrate-binding protein PstS [E...	7.0E-99	[1..346]	[1..346]
gi\|238797866, gi... - gi\|77961812\|ref\|ZP_00825642.1\| COG0226: ABC-type phosphate transport system, periplasmic component [...	9.0E-99	[1..346]	[1..346]
gi\|110644069, gi... - gi\|110644069\|ref\|YP_671799.1\| phosphate ABC transporter periplasmic substrate-binding protein PstS [... gi\|75242484, gi\|... - gi\|75242484\|ref\|ZP_00726228.1\| COG0226: ABC-type phosphate transport system, periplasmic component [...	1.0E-98	[1..346]	[1..346]
gi\|75514206, gi\|... - gi\|75514206\|ref\|ZP_00736514.1\| COG0226: ABC-type phosphate transport system, periplasmic component [...	1.0E-98	[1..346]	[1..346]
gi\|115515125, gi... - gi\|117626001\|ref\|YP_859324.1\| phosphate transporter subunit [Escherichia coli APEC O1], gi\|115515125... gi\|124530058, gi... - gi\|124530058\|ref\|ZP_01700841.1\| phosphate ABC transporter, periplasmic phosphate-binding protein [Es... gi\|75177709, gi\|... - gi\|75177709\|ref\|ZP_00697774.1\| COG0226: ABC-type phosphate transport system, periplasmic component [... gi\|157156796, gi... - gi\|75188483\|ref\|ZP_00701750.1\| COG0226: ABC-type phosphate transport system, periplasmic component [... gi\|83588407, gi\|... - gi\|83588407\|ref\|ZP_00927031.1\| COG0226: ABC-type phosphate transport system, periplasmic component [... EG10734 - phosphate ABC transporter periplasmic binding protein / Phosphate ABC transporter periplasmic bindin... gi\|253975581, gi... - gi\|254163680\|ref\|YP_003046788.1\| phosphate transporter subunit [Escherichia coli B str. REL606], gi\|... gi\|226838912, gi... - gi\|254038947\|ref\|ZP_04872999.1\| phosphate-binding protein pstS [Escherichia sp. 1_1_43], gi\|22683891... gi\|253775637, gi... - gi\|254290430\|ref\|YP_003056178.1\| phosphate transporter subunit [Escherichia coli BL21(DE3)], gi\|2539... gi\|251786993, gi... - gi\|251786993\|ref\|YP_003001297.1\| hypothetical protein B21_03556 [Escherichia coli BL21], gi\|24237926... EG10734 - phosphate ABC transporter periplasmic binding protein / Phosphate ABC transporter periplasmic bindin... gi\|238902819, gi... - gi\|238902819\|ref\|YP_002928615.1\| phosphate transporter subunit [Escherichia coli BW2952], gi\|2388620... gi\|226902793, gi... - gi\|237703529\|ref\|ZP_04534010.1\| phosphate transporter subunit [Escherichia sp. 3_2_53FAA], gi\|226902... gi\|91074826, gi\|... - gi\|91213252\|ref\|YP_543238.1\| phosphate transporter subunit [Escherichia coli UTI89], gi\|91074826\|gb\|... gi\|170022235, gi... - gi\|170022235\|ref\|YP_001727189.1\| phosphate ABC transporter periplasmic substrate-binding protein Pst... PSTS_ECOLI - Phosphate-binding protein pstS precursor (PBP) - Escherichia coli gi\|170083230, gi... - gi\|170083230\|ref\|YP_001732550.1\| phosphate ABC transporter periplasmic-binding protein [Escherichia ... PSTS_SHIFL - Phosphate-binding protein PstS OS=Shigella flexneri GN=pstS PE=3 SV=1 gi\|24054203, gi\|... - gi\|24114956\|ref\|NP_709466.1\| phosphate transporter subunit [Shigella flexneri 2a str. 301], gi\|24054... gi\|30043304, gi\|... - gi\|30065043\|ref\|NP_839214.1\| phosphate transporter subunit [Shigella flexneri 2a str. 2457T], gi\|300... gi\|75231002, gi\|... - gi\|75231002\|ref\|ZP_00717437.1\| COG0226: ABC-type phosphate transport system, periplasmic component [... gi\|209914464, gi... - gi\|209921205\|ref\|YP_002295289.1\| phosphate ABC transporter periplasmic substrate-binding protein Pst... gi\|192957497, gi... - gi\|75236457\|ref\|ZP_00720553.1\| COG0226: ABC-type phosphate transport system, periplasmic component [... gi\|218556295, gi... - gi\|218556295\|ref\|YP_002389209.1\| phosphate ABC transporter periplasmic substrate-binding protein Pst... gi\|157163209, gi... - gi\|75197624\|ref\|ZP_00707694.1\| COG0226: ABC-type phosphate transport system, periplasmic component [... gi\|218560803, gi... - gi\|218560803\|ref\|YP_002393716.1\| phosphate ABC transporter periplasmic substrate-binding protein Pst... gi\|75210662, gi\|... - gi\|75210662\|ref\|ZP_00710803.1\| COG0226: ABC-type phosphate transport system, periplasmic component [... gi\|218429580, gi... - gi\|218692016\|ref\|YP_002400228.1\| phosphate ABC transporter periplasmic substrate-binding protein Pst... gi\|89110279, gi\|... - gi\|89110279\|ref\|AP_004059.1\| phosphate transporter subunit [Escherichia coli str. K-12 substr. W3110... gi\|218354182, gi... - gi\|218697450\|ref\|YP_002405117.1\| phosphate ABC transporter periplasmic substrate-binding protein Pst... gi\|193063881, gi... - gi\|75258267\|ref\|ZP_00729715.1\| COG0226: ABC-type phosphate transport system, periplasmic component [... gi\|81247425, gi\|... - gi\|82546014\|ref\|YP_409961.1\| phosphate transporter subunit [Shigella boydii Sb227], gi\|81247425\|gb\|A...	1.0E-98	[1..346]	[1..346]
gi\|83571517, gi\|... - gi\|83571517\|ref\|ZP_00922957.1\| COG0226: ABC-type phosphate transport system, periplasmic component [...	2.0E-98	[1..346]	[1..346]

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Predicted Domain #1

Region A:
Residues: [1-346]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLMRTTVAS IVAATLSMTA VSAFAAASLT GAGATFPAPV YAKWADSYQK ETGNKINYQG  60
   61 IGSSGGVKQI IANTVDFGAS DAPLTDEKLA TEGLFQFPTV IGGVVLAVNI PGIKSGELTL 120
  121 DGKTLGDIYL GTVKKWNDPA IVKLNPGVKL PDQNIAVVRR ADGSGTSFVF TSYLAKVNAE 180
  181 WKEKVGAGST VNWPTGLGGK GNDGIAAFVQ RLPGSIGYVE YAYAKQNNLA YTKLISADGK 240
  241 PVSPTEHSFS SAAKGVDWSK SFAQDLTNQK GDDVWPITST TFILVHKEQK NAANGTEVLK 300
  301 FFDWGYTHGA KQANELDYAT LPAEVVEQVR AAWKTQIKDS SGKPIF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	96.69897
Match:	1a54A
Description:	Phosphate-binding protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.144254316055515	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: