YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229162483, gi...
Organism:	Bacillus cereus R309803
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229162483, gi....

Description	E-value	Query Range	Subject Range
HUTP_BACCZ - Hut operon positive regulatory protein OS=Bacillus cereus (strain ZK / E33L) GN=hutP PE=3 SV=1	268.0	[0..1]	[146..1]
gi\|228857577, gi... - gi\|228902151\|ref\|ZP_04066315.1\| Hut operon positive regulatory protein [Bacillus thuringiensis IBL 4... gi\|75762071, gi\|... - gi\|75762071\|ref\|ZP_00741979.1\| Hut operon positive regulatory protein [Bacillus thuringiensis serova...	263.0	[0..1]	[146..1]
HUTP_BACSU - Hut operon positive regulatory protein OS=Bacillus subtilis GN=hutP PE=1 SV=4 gi\|221325427 - gi\|221325427\|ref\|ZP_03606721.1\| anti-terminator HutP [Bacillus subtilis subsp. subtilis str. SMY] HUTP_BACSU - Hut operon positive regulatory protein OS=Bacillus subtilis (strain 168) GN=hutP PE=1 SV=4 gi\|221321143 - gi\|221321143\|ref\|ZP_03602437.1\| anti-terminator HutP [Bacillus subtilis subsp. subtilis str. JH642] gi\|221316231 - gi\|221316231\|ref\|ZP_03598036.1\| anti-terminator HutP [Bacillus subtilis subsp. subtilis str. NCIB 36...	251.0	[0..1]	[146..1]
gi\|73049, gi\|143... - pir\|\|RGBSHP regulatory protein hutP [similarity] - Bacillus subtilis, gi\|603771\|dbj\|BAA06645.1\| Hut... gi\|16080985, gi\|... - gi\|2636480\|emb\|CAB15970.1\| transcriptional antiterminator [Bacillus subtilis subsp. subtilis str. 16...	250.0	[0..1]	[146..4]
gi\|89149401, gi\|... - gi\|89202539\|ref\|ZP_01181256.1\| hut operon transcriptional activator [Bacillus cereus subsp. cytotoxi...	244.0	[0..12]	[146..1]
HUTP_BACCE - Hut operon positive regulatory protein (Fragment) OS=Bacillus cereus GN=hutP PE=3 SV=1	244.0	[0..1]	[132..1]
HUTP_BACHD - Hut operon positive regulatory protein OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FER... HUTP_BACHD - Hut operon positive regulatory protein OS=Bacillus halodurans GN=hutP PE=3 SV=1	240.0	[0..1]	[146..1]
gi\|56418919, gi\|... - gi\|56418919\|ref\|YP_146237.1\| anti-terminator HutP [Geobacillus kaustophilus HTA426], gi\|56378761\|dbj...	195.0	[0..8]	[146..7]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLQGTHRIG RMAMLLALAD ENESPVLSIP KGWKYCTGKV GSMNSQKVVA AMETAAKSNQ  60
   61 VIETDVYRET HALYHAIMEA LYGVTRGQIQ LADVLRTVGL RFAIVRGTPY DGKKEGEWVA 120
  121 VALYGTIGAP VKGSEHEAIG LGINHI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.0
Match:	1veaA
Description:	Crystal Structure of HutP, an RNA binding antitermination protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits