YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229349958, gi...
Organism:	Vibrio cholerae TMA 21
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229349958, gi....

Description	E-value	Query Range	Subject Range
gi\|208814970, gi... - gi\|208814970\|ref\|ZP_03256149.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC... gi\|208729215, gi... - gi\|208809414\|ref\|ZP_03251751.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC... CITD_ECO5E - Citrate lyase acyl carrier protein OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=citD PE=3 S... gi\|208737322, gi... - gi\|208823129\|ref\|ZP_03263447.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC... CITD_ECOUT - Citrate lyase acyl carrier protein OS=Escherichia coli (strain UTI89 / UPEC) GN=citD PE=3 SV=1 CITD_ECO27 - Citrate lyase acyl carrier protein OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=citD PE=3... CILG_ECOLI, CITD... - Citrate lyase acyl carrier protein (Citrate lyase gamma chain) - Escherichia coli, (P77618) Citrate ... gi\|15829910, gi\|... - gi\|15829910\|ref\|NP_308683.1\| citrate lyase subunit gamma [Escherichia coli O157:H7 str. Sakai], gi\|1... CITD_ECOSE - Citrate lyase acyl carrier protein OS=Escherichia coli (strain SE11) GN=citD PE=3 SV=1 CITD_ECOL5 - Citrate lyase acyl carrier protein OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=citD PE=3 S... CITD_ECO8A - Citrate lyase acyl carrier protein OS=Escherichia coli O8 (strain IAI1) GN=citD PE=3 SV=1 CITD_SHIF8 - Citrate lyase acyl carrier protein OS=Shigella flexneri serotype 5b (strain 8401) GN=citD PE=3 SV=1 gi\|217324878, gi... - gi\|217324878\|ref\|ZP_03440962.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. TW... gi\|187769754, gi... - gi\|187769754\|gb\|EDU33598.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC4196... gi\|189360911, gi... - gi\|189360911\|gb\|EDU79330.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC4486... gi\|124499346, gi... - gi\|124530183\|ref\|ZP_01700932.1\| citrate lyase acyl carrier protein [Escherichia coli B], gi\|12449934... gi\|189373673, gi... - gi\|189373673\|gb\|EDU92089.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC869]... gi\|168779108, gi... - gi\|189003006\|gb\|EDU71992.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC4076... gi\|169888134, gi... - gi\|170080299\|ref\|YP_001729619.1\| citrate lyase, acyl carrier (gamma) subunit [Escherichia coli str. ... gi\|168798178, gi... - gi\|189379356\|gb\|EDU97772.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC508]... gi\|195936167 - gi\|195936167\|ref\|ZP_03081549.1\| citrate lyase subunit gamma [Escherichia coli O157:H7 str. EC4024] CITD_ECOSM - Citrate lyase acyl carrier protein OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=citD PE=3 SV=1 CITD_ECO55 - Citrate lyase acyl carrier protein OS=Escherichia coli (strain 55989 / EAEC) GN=citD PE=3 SV=1 CITD_ECO45 - Citrate lyase acyl carrier protein OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=citD PE=3 SV=1 CITD_ECOLU - Citrate lyase acyl carrier protein OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=citD P... CITD_ECO7I - Citrate lyase acyl carrier protein OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=citD PE=3 SV=... gi\|237707410, gi... - gi\|237707410\|ref\|ZP_04537891.1\| citrate lyase subunit gamma [Escherichia sp. 3_2_53FAA], gi\|22689862... CITD_ECOBW - Citrate lyase acyl carrier protein OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=citD PE=3 S... CITD_ECOLC - Citrate lyase acyl carrier protein OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=cit... gi\|242376393, gi... - gi\|251784120\|ref\|YP_002998424.1\| hypothetical protein B21_00574 [Escherichia coli BL21], gi\|24237639... gi\|254287486, gi... - gi\|254287486\|ref\|YP_003053234.1\| citrate lyase, acyl carrier (gamma) subunit [Escherichia coli BL21(... gi\|188017671, gi... - gi\|188017671\|gb\|EDU55793.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC4113... gi\|168760233, gi... - gi\|189369148\|gb\|EDU87564.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC4501... gi\|189358071, gi... - gi\|189358071\|gb\|EDU76490.1\| citrate lyase acyl carrier protein [Escherichia coli O157:H7 str. EC4401... gi\|89107484, gi\|... - gi\|89107484\|ref\|AP_001264.1\| citrate lyase, acyl carrier (gamma) subunit [Escherichia coli str. K-12... gi\|75258646, gi\|... - gi\|75258646\|ref\|ZP_00730053.1\| COG3052: Citrate lyase, gamma subunit [Escherichia coli E22], gi\|1930... gi\|188488204, gi... - gi\|75514711\|ref\|ZP_00736966.1\| COG3052: Citrate lyase, gamma subunit [Escherichia coli 53638], gi\|18... gi\|192957572, gi... - gi\|75236599\|ref\|ZP_00720687.1\| COG3052: Citrate lyase, gamma subunit [Escherichia coli E110019], gi\|... sp\|B7UKQ9\|CITD_ECO27 - Citrate lyase acyl carrier protein OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=citD PE=3... gi\|190907400, gi... - gi\|75240773\|ref\|ZP_00724680.1\| COG3052: Citrate lyase, gamma subunit [Escherichia coli F11], gi\|1911... CITD_SHISS - Citrate lyase acyl carrier protein OS=Shigella sonnei (strain Ss046) GN=citD PE=3 SV=1 gi\|194437463, gi... - gi\|83586948\|ref\|ZP_00925578.1\| COG3052: Citrate lyase, gamma subunit [Escherichia coli 101-1], gi\|19... gi\|75210755, gi\|... - gi\|75210755\|ref\|ZP_00710887.1\| COG3052: Citrate lyase, gamma subunit [Escherichia coli B171], gi\|194... gi\|75229498, gi\|... - gi\|75229498\|ref\|ZP_00716045.1\| COG3052: Citrate lyase, gamma subunit [Escherichia coli B7A], gi\|1911... CITD_ECO24 - Citrate lyase acyl carrier protein OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=citD PE=3... CITD_ECOHS - Citrate lyase acyl carrier protein OS=Escherichia coli O9:H4 (strain HS) GN=citD PE=3 SV=1 gi\|253972599, gi... - gi\|254160698\|ref\|YP_003043806.1\| citrate lyase, acyl carrier (gamma) subunit [Escherichia coli B str... gi\|254591184, gi... - gi\|254791784\|ref\|YP_003076621.1\| citrate lyase, acyl carrier (gamma) subunit [Escherichia coli O157:... CITD_ECO57 - Citrate lyase acyl carrier protein OS=Escherichia coli O157:H7 GN=citD PE=3 SV=1 gi\|12513516, gi\|... - gi\|15800332\|ref\|NP_286344.1\| citrate lyase subunit gamma [Escherichia coli O157:H7 EDL933], gi\|12513... EG13543 - citrate lyase, acyl carrier (gamma) subunit / Citrate lyase acyl carrier protein EG13543 - citrate lyase, acyl carrier (gamma) subunit / Citrate lyase acyl carrier protein	149.0	[0..1]	[95..1]
gi\|30062074, gi\|... - gi\|30062074\|ref\|NP_836245.1\| citrate lyase subunit gamma [Shigella flexneri 2a str. 2457T], gi\|30040... CITD_SHIFL - Citrate lyase acyl carrier protein OS=Shigella flexneri GN=citD PE=3 SV=2 gi\|56479684, gi\|... - gi\|56479684\|ref\|NP_706471.2\| citrate lyase subunit gamma [Shigella flexneri 2a str. 301], gi\|5638323...	149.0	[0..1]	[95..1]
CITD_SHIB3 - Citrate lyase acyl carrier protein OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ci...	149.0	[0..1]	[95..1]
CITD_SHIBS - Citrate lyase acyl carrier protein OS=Shigella boydii serotype 4 (strain Sb227) GN=citD PE=3 SV=1	147.0	[0..1]	[95..1]
gi\|254222155, gi... - gi\|75823902\|ref\|ZP_00753377.1\| COG3052: Citrate lyase, gamma subunit [Vibrio cholerae RC385], gi\|254... gi\|124123889, gi... - gi\|153800600\|ref\|ZP_01955186.1\| citrate lyase, gamma subunit [Vibrio cholerae MZO-3], gi\|124123889\|g... gi\|229339748, gi... - gi\|229523385\|ref\|ZP_04412792.1\| citrate lyase beta chain [Vibrio cholerae TM 11079-80], gi\|229339748... tr\|A2PP62\|A2PP62... - Citrate lyase acyl carrier protein OS=Vibrio cholerae GN=citD PE=3 SV=1, Citrate lyase acyl carrier ... gi\|148876205, gi... - gi\|153828251\|ref\|ZP_01980918.1\| citrate lyase, gamma subunit [Vibrio cholerae 623-39], gi\|148876205\|... gi\|149741804, gi... - gi\|153824586\|ref\|ZP_01977253.1\| citrate lyase, gamma subunit [Vibrio cholerae MZO-2], gi\|149741804\|g...	147.0	[0..1]	[98..1]
CITD_VIBC3 - Citrate lyase acyl carrier protein OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Oga... gi\|121725979, gi... - gi\|75816826\|ref\|ZP_00747285.1\| COG3052: Citrate lyase, gamma subunit [Vibrio cholerae V52], gi\|12172...	145.0	[0..1]	[98..1]
CITD_STRMU - Citrate lyase acyl carrier protein OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) G... gi\|254997429 - gi\|254997429\|dbj\|BAH88030.1\| putative citrate lyase gamma-subunit [Streptococcus mutans NN2025] CITD_STRMU - Citrate lyase acyl carrier protein OS=Streptococcus mutans GN=citD PE=3 SV=1	145.0	[0..1]	[97..1]
gi\|194432526, gi... - gi\|83570448\|ref\|ZP_00921893.1\| COG3052: Citrate lyase, gamma subunit [Shigella dysenteriae 1012], gi...	144.0	[0..1]	[95..1]
CITD_STRPD - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=citD ... CITD_STRPG - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=citD P... gi\|71910718, gi\|... - gi\|71910718\|ref\|YP_282268.1\| citrate lyase subunit gamma [Streptococcus pyogenes MGAS5005], gi\|71853... CITD_STRP6 - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M6 GN=citD PE=3 SV=1 CITD_STRPZ - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=citD PE=... CITD_STRP6 - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS... CITD_STRP1 - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M1 GN=citD PE=3 SV=1 gi\|15675156, gi\|... - gi\|15675156\|ref\|NP_269330.1\| citrate lyase subunit gamma [Streptococcus pyogenes M1 GAS], gi\|1362231...	144.0	[0..1]	[97..1]
CITD_STRP8 - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M18 GN=citD PE=3 SV=1 CITD_STRP8 - Citrate lyase acyl carrier protein OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=citD ...	144.0	[0..1]	[97..1]

Back

Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAHPAFAG TLESSDLQVR IEPNNDGGIE LVLDSTVEQQ FGHAIRQVVL HTLDAMQVRD  60
   61 ALVTIEDKGA LDCVIRARVQ AAVMRACDVQ NIEWSQLS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	69.744727
Match:	PF04953.4
Description:	No description for PF04953.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits