YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229516928, gi...
Organism:	Vibrio cholerae RC9
Length:	72 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229516928, gi....

Description	E-value	Query Range	Subject Range
RL31_THIDA - 50S ribosomal protein L31 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpmE PE=3 SV=1	122.0	[0..1]	[67..1]
RL31_AROAE - 50S ribosomal protein L31 OS=Aromatoleum aromaticum (strain EbN1) GN=rpmE PE=3 SV=1	122.0	[0..1]	[66..1]
gi\|153840404, gi... - gi\|153840404\|ref\|ZP_01993071.1\| ribosomal protein L31 [Vibrio parahaemolyticus AQ3810], gi\|149745932... RL31_VIBPA - 50S ribosomal protein L31 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rpmE PE... RL31_VIBPA - 50S ribosomal protein L31 OS=Vibrio parahaemolyticus GN=rpmE PE=3 SV=1	121.0	[0..1]	[72..1]
gi\|148550162, gi... - gi\|82736115\|ref\|ZP_00898975.1\| Ribosomal protein L31 [Pseudomonas putida F1], gi\|82716758\|gb\|EAP5181... gi\|24986872, gi\|... - gi\|26991763\|ref\|NP_747188.1\| ribosomal protein L31 [Pseudomonas putida KT2440], gi\|24986872\|gb\|AAN70...	120.0	[0..1]	[72..30]
RL31_VIBVY - 50S ribosomal protein L31 OS=Vibrio vulnificus (strain YJ016) GN=rpmE PE=3 SV=1	120.0	[0..1]	[72..1]
RL31_PSEHT - 50S ribosomal protein L31 OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=rpmE PE=3 SV=1	120.0	[0..1]	[72..1]
gi\|88819060, gi\|... - gi\|88858834\|ref\|ZP_01133475.1\| 50S ribosomal subunit protein L31 [Pseudoalteromonas tunicata D2], gi...	120.0	[0..1]	[72..5]
gi\|91187416, gi\|... - gi\|91229291\|ref\|ZP_01262908.1\| 50S ribosomal protein L31 [Vibrio alginolyticus 12G01], gi\|91187416\|g... gi\|75854325, gi\|... - gi\|75854325\|ref\|ZP_00762025.1\| COG0254: Ribosomal protein L31 [Vibrio sp. Ex25], gi\|116183924\|ref\|ZP...	120.0	[0..1]	[72..1]
RL31_VIBVU - 50S ribosomal protein L31 OS=Vibrio vulnificus (strain CMCP6) GN=rpmE PE=3 SV=1 RL31_VIBVU - 50S ribosomal protein L31 OS=Vibrio vulnificus GN=rpmE PE=3 SV=1	120.0	[0..1]	[72..1]
gi\|84390842, gi\|... - gi\|84390842\|ref\|ZP_00991534.1\| 50S ribosomal protein L31 [Vibrio splendidus 12B01], gi\|84376645\|gb\|E...	119.0	[0..1]	[72..1]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAGIHPEYK AVNATCSCGN SFVFNSTLGK DTMHLDVCDK CHPFYSGKQR IVDTGGRVER  60
   61 FNKRFGALSA KK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1vs6Z
Description:	No description for 1vs6Z was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.93798084434094	bayes_pls_golite062009
structural molecule activity	9.3625249805433	bayes_pls_golite062009
binding	0.865205020833206	bayes_pls_golite062009
protein binding	0.159303137691685	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: