YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229371127, gi...
Organism:	Vibrio cholerae MJ-1236
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229371127, gi....

Description	E-value	Query Range	Subject Range
Y718_VIBPA - UPF0250 protein VP0718 OS=Vibrio parahaemolyticus GN=VP0718 PE=3 SV=1 Y718_VIBPA - UPF0250 protein VP0718 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=VP0718 PE=...	148.0	[0..1]	[92..1]
Y902_VIBVY - UPF0250 protein VV0902 OS=Vibrio vulnificus (strain YJ016) GN=VV0902 PE=3 SV=1 Y282_VIBVU - UPF0250 protein VV1_0282 OS=Vibrio vulnificus GN=VV1_0282 PE=3 SV=1 Y282_VIBVU - UPF0250 protein VV1_0282 OS=Vibrio vulnificus (strain CMCP6) GN=VV1_0282 PE=3 SV=1	147.0	[0..1]	[92..1]
Y794_SODGM - UPF0250 protein SG0794 OS=Sodalis glossinidius (strain morsitans) GN=SG0794 PE=3 SV=1	141.0	[0..7]	[92..2]
gi\|238790456, gi... - gi\|77973027\|ref\|ZP_00828580.1\| COG2921: Uncharacterized conserved protein [Yersinia frederiksenii AT...	138.0	[0..7]	[92..2]
gi\|229700860, gi... - gi\|229895937\|ref\|ZP_04511107.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229700860\|gb\|EEO... gi\|229688291, gi... - gi\|229898743\|ref\|ZP_04513888.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|166008480, gi... - gi\|166008480\|ref\|ZP_02229378.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165925337, gi... - gi\|165925337\|ref\|ZP_02221169.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y1853_YERPG - UPF0250 protein YpAngola_A1853 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A1853 PE=3... Y2499_YERPA - UPF0250 protein YPA_2499 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_2499 PE=3 SV=1 Y2953_YERP3 - UPF0250 protein YpsIP31758_2953 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... Y1085_YERPN - UPF0250 protein YPN_1085 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_1085 PE=3 SV=1 gi\|149365499, gi... - gi\|149365499\|ref\|ZP_01887534.1\| hypothetical protein YPE_0664 [Yersinia pestis CA88-4125], gi\|149291... Y2653_YERPP - UPF0250 protein YPDSF_2653 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_2653 PE=3 SV=1 Y2600_YERPE - UPF0250 protein YPO2600/y1174/YP_1113 OS=Yersinia pestis GN=YPO2600 PE=3 SV=1 gi\|89102291, gi\|... - gi\|89102291\|ref\|ZP_01174936.1\| COG2921: Uncharacterized conserved protein [Yersinia pestis biovar Or... gi\|45435802, gi\|... - gi\|45440943\|ref\|NP_992482.1\| hypothetical protein YP_1113 [Yersinia pestis biovar Microtus str. 9100... gi\|22125077, gi\|... - gi\|22125077\|ref\|NP_668500.1\| hypothetical protein y1174 [Yersinia pestis KIM], gi\|21957930\|gb\|AAM847... gi\|16122813, gi\|... - gi\|218929681\|ref\|YP_002347556.1\| hypothetical protein YPO2600 [Yersinia pestis CO92], gi\|16122813\|re... Y1093_YERPS - UPF0250 protein YPTB1093 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB1093 PE=3... Y1093_YERPS - UPF0250 protein YPTB1093 OS=Yersinia pseudotuberculosis GN=YPTB1093 PE=3 SV=1 gi\|167399624, gi... - gi\|167399624\|ref\|ZP_02305148.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166206303, gi... - gi\|166212372\|ref\|ZP_02238407.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167057690, gi... - gi\|167423520\|ref\|ZP_02315273.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167422548, gi... - gi\|167422548\|ref\|ZP_02314301.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... Y1150_YERPB - UPF0250 protein YPTS_1150 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_1150 PE=... Y3025_YERPY - UPF0250 protein YPK_3025 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_3025 PE=3... gi\|229694512, gi... - gi\|229838146\|ref\|ZP_04458305.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi...	137.0	[0..7]	[92..2]
gi\|77962167 - gi\|77962167\|ref\|ZP_00825991.1\| COG2921: Uncharacterized conserved protein [Yersinia mollaretii ATCC ...	136.0	[0..7]	[92..2]
Y1293_PHOLL, YC9... - (Q7N765) Hypothetical UPF0250 protein plu1293, UPF0250 protein plu1293 OS=Photorhabdus luminescens s... Y1293_PHOLL - UPF0250 protein plu1293 OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ...	136.0	[0..7]	[92..2]
gi\|58176674 - gi\|58176674\|pdb\|1RWU\|A Chain A, Solution Structure Of Conserved Protein Ybed From E. Coli	136.0	[0..7]	[92..24]
gi\|77957579 - gi\|77957579\|ref\|ZP_00821631.1\| COG2921: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	136.0	[0..7]	[92..2]
gi\|77979029 - gi\|77979029\|ref\|ZP_00834451.1\| COG2921: Uncharacterized conserved protein [Yersinia intermedia ATCC ...	135.0	[0..7]	[92..2]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNINSDAKL KDLLEFPCSF TYKVMGHAKP ELPERVLEVI QRHAPGDYSP RVKPSAKGNY  60
   61 HSVSVTIHAT SIEQVEILYK ELGEIDIVRM VL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1rwuA
Description:	Solution structure of conserved protein YbeD from E. coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits