YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254287027, gi...
Organism:	Escherichia coli BL21(DE3)
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254287027, gi....

Description	E-value	Query Range	Subject Range
gi\|227884993, gi... - gi\|227884993\|ref\|ZP_04002798.1\| dephospho-CoA kinase [Escherichia coli 83972], gi\|227838131\|gb\|EEJ48... COAE_ECOL6 - Dephospho-CoA kinase OS=Escherichia coli O6 GN=coaE PE=3 SV=1 COAE_ECOL6 - Dephospho-CoA kinase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=coaE PE=3 SV=...	186.0	[0..1]	[206..1]
gi\|78366242, gi\|... - gi\|78366242\|ref\|ZP_00836524.1\| Dephospho-CoA kinase [Shewanella sp. PV-4], gi\|78361830\|gb\|EAP03652.1...	182.0	[0..2]	[199..3]
gi\|88819239, gi\|... - gi\|88859013\|ref\|ZP_01133654.1\| dephospho-CoA kinase [Pseudoalteromonas tunicata D2], gi\|88819239\|gb\|...	182.0	[0..2]	[196..10]
COAE_SHIFL - Dephospho-CoA kinase OS=Shigella flexneri GN=coaE PE=3 SV=1 gi\|30061670, gi\|... - gi\|30061670\|ref\|NP_835841.1\| dephospho-CoA kinase [Shigella flexneri 2a str. 2457T], gi\|30039912\|gb\|... gi\|24111548, gi\|... - gi\|24111548\|ref\|NP_706058.1\| dephospho-CoA kinase [Shigella flexneri 2a str. 301], gi\|24050307\|gb\|AA... gi\|110804166, gi... - gi\|110804166\|ref\|YP_687686.1\| dephospho-CoA kinase [Shigella flexneri 5 str. 8401], gi\|110613714\|gb\|...	182.0	[0..1]	[206..1]
gi\|117622387, gi... - gi\|117622387\|ref\|YP_851300.1\| dephospho-CoA kinase [Escherichia coli APEC O1], gi\|115511511\|gb\|ABI99... gi\|226902163, gi... - gi\|237704251\|ref\|ZP_04534732.1\| dephospho-CoA kinase [Escherichia sp. 3_2_53FAA], gi\|226902163\|gb\|EE... gi\|218363811, gi... - gi\|218557042\|ref\|YP_002389955.1\| dephospho-CoA kinase [Escherichia coli S88], gi\|218363811\|emb\|CAR01... gi\|91209166, gi\|... - gi\|91209166\|ref\|YP_539152.1\| dephospho-CoA kinase [Escherichia coli UTI89], gi\|91070740\|gb\|ABE05621....	181.0	[0..1]	[206..1]
gi\|191174236, gi... - gi\|75236905\|ref\|ZP_00720967.1\| COG0237: Dephospho-CoA kinase [Escherichia coli F11], gi\|191174236\|re... gi\|110341907, gi... - gi\|110640315\|ref\|YP_668043.1\| dephospho-CoA kinase [Escherichia coli 536], gi\|110341907\|gb\|ABG68144....	181.0	[0..1]	[206..1]
gi\|40890023, gi\|... - gi\|40890023\|pdb\|1VIY\|C Chain C, Crystal Structure Of Dephospho-Coa Kinase, gi\|40890022\|pdb\|1VIY\|B Ch...	181.0	[0..3]	[206..5]
gi\|75511979, gi\|... - gi\|75511979\|ref\|ZP_00734574.1\| COG0237: Dephospho-CoA kinase [Escherichia coli 53638], gi\|188494165\|...	181.0	[0..1]	[206..1]
gi\|75233831, gi\|... - gi\|75233831\|ref\|ZP_00718301.1\| COG0237: Dephospho-CoA kinase [Escherichia coli E110019], gi\|19307123... gi\|218359452, gi... - gi\|218552684\|ref\|YP_002385597.1\| dephospho-CoA kinase [Escherichia coli IAI1], gi\|218359452\|emb\|CAQ9... gi\|218350302, gi... - gi\|218693570\|ref\|YP_002401237.1\| dephospho-CoA kinase [Escherichia coli 55989], gi\|218350302\|emb\|CAU...	180.0	[0..1]	[206..1]
gi\|238725103, gi... - gi\|77976087\|ref\|ZP_00831620.1\| COG0237: Dephospho-CoA kinase [Yersinia frederiksenii ATCC 33641], gi...	180.0	[0..1]	[198..1]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYIVALTGG IGSGKSTVAN AFADLGINVI DADIIARQVV EPGAPALHAI ADHFGANMIA  60
   61 ADGTLQRRAL RERIFANPEE KNWLNALLHP LIQQETQHQI QQATSPYVLW VVPLLVENSL 120
  121 YKKANRVLVV DVSPETQLKR TMQRDDVTRE HVEQILAAQA TREARLAVAD DVIDNNGAPD 180
  181 AIASDVARLH AHYLQLASQF VSQEKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.30103
Match:	1n3bA
Description:	Dephospho-CoA kinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00104173493322	bayes_pls_golite062009
dephospho-CoA kinase activity	0.656417599253142	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: