YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229186132, gi...
Organism:	Bacillus cereus BGSC 6E1
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229186132, gi....

Description	E-value	Query Range	Subject Range
gi\|228748330, gi... - gi\|229013076\|ref\|ZP_04170241.1\| Pyrimidine regulatory protein PyrR [Bacillus mycoides DSM 2048], gi\|... PYRR_BACWK - Bifunctional protein PyrR OS=Bacillus weihenstephanensis (strain KBAB4) GN=pyrR PE=3 SV=1 gi\|228648747, gi... - gi\|229134701\|ref\|ZP_04263510.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus BDRD-ST196], gi\|... gi\|228717731, gi... - gi\|229061497\|ref\|ZP_04198841.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus AH603], gi\|22871... gi\|228614788, gi... - gi\|229168632\|ref\|ZP_04296354.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus AH621], gi\|22861... gi\|228620709, gi... - gi\|229162827\|ref\|ZP_04290784.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus R309803], gi\|228...	8.0E-35	[1..180]	[1..180]
PYRR_BACHK - Bifunctional protein PyrR OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=pyrR PE=3 SV=... PYRR_BACC0 - Bifunctional protein PyrR OS=Bacillus cereus (strain AH820) GN=pyrR PE=3 SV=1 gi\|196035847, gi... - gi\|196035847\|ref\|ZP_03103249.1\| pyrimidine operon regulatory protein [Bacillus cereus W], gi\|1959914... gi\|228992626, gi... - gi\|228992626\|ref\|ZP_04152552.1\| Pyrimidine regulatory protein PyrR [Bacillus pseudomycoides DSM 1244... gi\|228947611, gi... - gi\|228947611\|ref\|ZP_04109901.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis serovar m... gi\|228824372, gi... - gi\|228935207\|ref\|ZP_04098033.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis serovar a... gi\|228830747, gi... - gi\|228928940\|ref\|ZP_04091972.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis serovar p... PYRR_BACHK - Bifunctional protein pyrR OS=Bacillus thuringiensis subsp. konkukian GN=pyrR PE=3 SV=1 gi\|229198003, gi... - gi\|229198003\|ref\|ZP_04324717.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus m1293], gi\|22858... gi\|228660181, gi... - gi\|229123405\|ref\|ZP_04252609.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus 95/8201], gi\|228... gi\|228755015, gi... - gi\|229006174\|ref\|ZP_04163860.1\| Pyrimidine regulatory protein PyrR [Bacillus mycoides Rock1-4], gi\|2... gi\|228761140, gi... - gi\|228998672\|ref\|ZP_04158259.1\| Pyrimidine regulatory protein PyrR [Bacillus mycoides Rock3-17], gi\|...	9.0E-35	[1..180]	[1..180]
gi\|47570306, gi\|... - gi\|47570306\|ref\|ZP_00240953.1\| pyrimidine operon regulatory protein PyrR [Bacillus cereus G9241], gi... gi\|229025338, gi... - gi\|229025338\|ref\|ZP_04181756.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus AH1272], gi\|2287... gi\|228742194, gi... - gi\|229019094\|ref\|ZP_04175929.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus AH1273], gi\|2287... gi\|229174557, gi... - gi\|229174557\|ref\|ZP_04302088.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus MM3], gi\|2286089... gi\|229031523, gi... - gi\|229031523\|ref\|ZP_04187523.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus AH1271], gi\|2287...	9.0E-35	[1..180]	[1..180]
PYRR_BACC1 - Bifunctional protein PyrR OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=pyrR PE=3 SV=1	3.0E-34	[1..180]	[1..180]
PYRR_BACCN - Bifunctional protein PyrR OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	5.0E-34	[1..180]	[1..180]
PYRR_BACHD - Bifunctional protein PyrR OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... PYRR_BACHD - Bifunctional protein pyrR OS=Bacillus halodurans GN=pyrR PE=3 SV=1	1.0E-32	[5..180]	[3..178]
PYRR_BACSU - Bifunctional protein pyrR OS=Bacillus subtilis GN=pyrR PE=1 SV=2 gi\|221322943 - gi\|221322943\|ref\|ZP_03604237.1\| bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosy... PYRR_BACSU - Bifunctional protein PyrR OS=Bacillus subtilis (strain 168) GN=pyrR PE=1 SV=2 gi\|221318670 - gi\|221318670\|ref\|ZP_03599964.1\| bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosy... gi\|221313746 - gi\|221313746\|ref\|ZP_03595551.1\| bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosy...	1.0E-31	[1..179]	[1..179]
gi\|239631457, gi... - gi\|239631457\|ref\|ZP_04674488.1\| pyrimidine operon attenuation protein/uracil phosphoribosyltransfera... gi\|191638453, gi... - gi\|191638453\|ref\|YP_001987619.1\| bifunctional pyrimidine regulatory protein PyrR uracil phosphoribos... gi\|116494943, gi... - gi\|62514619\|ref\|ZP_00386118.1\| COG2065: Pyrimidine operon attenuation protein/uracil phosphoribosylt...	2.0E-31	[1..179]	[1..179]
PYRR_OCEIH - Bifunctional protein pyrR OS=Oceanobacillus iheyensis GN=pyrR PE=3 SV=1 PYRR_OCEIH - Bifunctional protein PyrR OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HT...	2.0E-31	[1..180]	[1..180]
gi\|56964103, gi\|... - gi\|56964103\|ref\|YP_175834.1\| pyrimidine regulatory protein PyrR [Bacillus clausii KSM-K16], gi\|56910...	2.0E-31	[1..178]	[20..197]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEKAVVLDD QMIRRALTRI SHEIVERNKG VDNCVLVGIK TRGIFIAQRL AERIGQIEGK  60
   61 EMEVGELDIT LYRDDLTLQS KNKEPLVKGS DIPVDITKKK VILVDDVLYT GRTVRAAMDA 120
  121 LMDLGRPSQI QLAVLVDRGH RELPIRADYV GKNIPTSSEE RIEVDLQETD QQDRVSIYDK 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1a3cA
Description:	PYRR, THE BACILLUS SUBTILIS PYRIMIDINE BIOSYNTHETIC OPERON REPRESSOR, DIMERIC FORM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring glycosyl groups	4.2311942024575	bayes_pls_golite062009
uracil phosphoribosyltransferase activity	4.16478627082997	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	3.03016109611914	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	2.87924736622135	bayes_pls_golite062009
catalytic activity	2.67475805095976	bayes_pls_golite062009
adenine phosphoribosyltransferase activity	2.55041201441853	bayes_pls_golite062009
transferase activity	2.23444207913717	bayes_pls_golite062009
orotate phosphoribosyltransferase activity	1.74456227958952	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	1.7212298503296	bayes_pls_golite062009
diphosphotransferase activity	1.16607700772697	bayes_pls_golite062009
amidophosphoribosyltransferase activity	1.14461122399598	bayes_pls_golite062009
transcription regulator activity	0.638819926590526	bayes_pls_golite062009
nucleic acid binding	0.365716008829981	bayes_pls_golite062009
DNA binding	0.197909920189603	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: