YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229706498, gi...
Organism:	Yersinia pestis Pestoides A
Length:	66 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229706498, gi....

Description	E-value	Query Range	Subject Range
gi\|77631046 - gi\|77631046\|ref\|ZP_00793632.1\| COG1942: Uncharacterized protein, 4-oxalocrotonate tautomerase homolo...	2.0E-19	[1..66]	[5..70]
gi\|51598119, gi\|... - gi\|51598119\|ref\|YP_072310.1\| tautomerase enzyme [Yersinia pseudotuberculosis IP 32953], gi\|51591401\|... Q664E0\|Q664E0_YERPS - Possible Tautomerase enzyme - Yersinia pseudotuberculosis	2.0E-19	[1..66]	[46..111]
gi\|145600607, gi... - gi\|145600607\|ref\|YP_001164683.1\| tautomerase [Yersinia pestis Pestoides F], gi\|145212303\|gb\|ABP41710... gi\|21960830, gi\|... - gi\|22127710\|ref\|NP_671133.1\| hypothetical protein y3839 [Yersinia pestis KIM], gi\|21960830\|gb\|AAM873... gi\|108777447, gi... - gi\|108813799\|ref\|YP_649566.1\| tautomerase [Yersinia pestis Nepal516], gi\|108777447\|gb\|ABG19966.1\| ta... gi\|45443101, gi\|... - gi\|45443101\|ref\|NP_994640.1\| hypothetical protein YP_3352 [Yersinia pestis biovar Microtus str. 9100... gi\|108809808, gi... - gi\|108809808\|ref\|YP_653724.1\| putative tautomerase [Yersinia pestis Antiqua], gi\|108781721\|gb\|ABG157...	3.0E-19	[1..66]	[46..111]
gi\|89105100 - gi\|89105100\|ref\|ZP_01177626.1\| COG1942: Uncharacterized protein, 4-oxalocrotonate tautomerase homolo... gi\|77635492 - gi\|77635492\|ref\|ZP_00797576.1\| COG1942: Uncharacterized protein, 4-oxalocrotonate tautomerase homolo...	5.0E-19	[1..66]	[5..70]
gi\|94416392 - gi\|94416392\|ref\|ZP_01296218.1\| hypothetical protein PaerP_01001714 [Pseudomonas aeruginosa PA7]	6.0E-19	[1..65]	[3..67]
gi\|238783922, gi... - gi\|77959596\|ref\|ZP_00823614.1\| COG1942: Uncharacterized protein, 4-oxalocrotonate tautomerase homolo...	6.0E-19	[1..66]	[5..70]
gi\|238719108, gi... - gi\|77963002\|ref\|ZP_00826816.1\| COG1942: Uncharacterized protein, 4-oxalocrotonate tautomerase homolo...	7.0E-19	[1..66]	[5..70]
gi\|77978637 - gi\|77978637\|ref\|ZP_00834063.1\| COG1942: Uncharacterized protein, 4-oxalocrotonate tautomerase homolo...	8.0E-19	[1..66]	[5..70]
gi\|77975125, gi\|... - gi\|77975125\|ref\|ZP_00830662.1\| COG1942: Uncharacterized protein, 4-oxalocrotonate tautomerase homolo...	1.0E-18	[1..66]	[10..75]
YOTL_DICD3 - Probable tautomerase K2 OS=Dickeya dadantii (strain 3937) PE=3 SV=3 gi\|495248, gi\|10... - gi\|495248\|emb\|CAA52960.1\| unnamed protein product [Erwinia chrysanthemi], gi\|1176508\|sp\|P45418\|YOTL_...	2.0E-18	[1..66]	[1..66]

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Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYVNIKITR EGATAEQKKQ LIAGVTQLLV DTLGKNPATT VVVIDEVETD NWGIGGRSVT  60
   61 DLRQSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.0
Match:	1otfA
Description:	4-oxalocrotonate tautomerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.20739155013755	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: