YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227008915, gi...
Organism:	Vibrio cholerae M66-2
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227008915, gi....

Description	E-value	Query Range	Subject Range
gi\|75831931, gi\|... - gi\|75831931\|ref\|ZP_00761190.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio cholerae MO10], gi\|1... SMPA_VIBCH - Small protein A homolog OS=Vibrio cholerae GN=smpA PE=3 SV=1 BAME_VIBC3 - Outer membrane protein assembly factor BamE OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Clas... gi\|75822957, gi\|... - gi\|75822957\|ref\|ZP_00752502.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio cholerae RC385], gi\|... gi\|75818218, gi\|... - gi\|75818218\|ref\|ZP_00748414.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio cholerae V51], gi\|11... BAME_VIBCH - Outer membrane protein assembly factor BamE OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El T... gi\|75816111 - gi\|75816111\|ref\|ZP_00746591.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio cholerae V52]	164.0	[0..18]	[136..1]
gi\|27359954, gi\|... - gi\|27363837\|ref\|NP_759365.1\| small protein A [Vibrio vulnificus CMCP6], gi\|27359954\|gb\|AAO08892.1\|AE...	160.0	[0..18]	[134..1]
gi\|75857319, gi\|... - gi\|75857319\|ref\|ZP_00764935.1\| COG2913: Small protein A (tmRNA-binding) [Vibrio sp. Ex25], gi\|116186...	159.0	[0..18]	[135..1]
gi\|84387680, gi\|... - gi\|84387680\|ref\|ZP_00990697.1\| Small protein A [Vibrio splendidus 12B01], gi\|84377525\|gb\|EAP94391.1\|... gi\|148980257, gi... - gi\|148980257\|ref\|ZP_01815965.1\| Small protein A [Vibrionales bacterium SWAT-3], gi\|145961351\|gb\|EDK2...	158.0	[0..18]	[134..1]
gi\|28897421, gi\|... - gi\|28897421\|ref\|NP_797026.1\| small protein A [Vibrio parahaemolyticus RIMD 2210633], gi\|28805633\|dbj... gi\|28805633 - gi\|28805633\|dbj\|BAC58910.1\| small protein A [Vibrio parahaemolyticus RIMD 2210633] gi\|153837727, gi... - gi\|153837727\|ref\|ZP_01990394.1\| small protein A [Vibrio parahaemolyticus AQ3810], gi\|149748922\|gb\|ED...	158.0	[0..18]	[135..1]
gi\|37679005, gi\|... - gi\|37679005\|ref\|NP_933614.1\| small protein A [Vibrio vulnificus YJ016], gi\|37197747\|dbj\|BAC93585.1\| ...	158.0	[0..18]	[134..1]
gi\|86145629, gi\|... - gi\|86145629\|ref\|ZP_01063959.1\| Small protein A [Vibrio sp. MED222], gi\|85836600\|gb\|EAQ54726.1\| Small...	157.0	[0..18]	[134..1]
gi\|33152315, gi\|... - gi\|33152315\|ref\|NP_873668.1\| small protein A [Haemophilus ducreyi 35000HP], gi\|33148538\|gb\|AAP96057....	156.0	[0..20]	[135..2]
BAME_VIBF1 - Outer membrane protein assembly factor BamE OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=bamE ...	156.0	[0..18]	[133..1]
gi\|91225102, gi\|... - gi\|91225102\|ref\|ZP_01260324.1\| small protein A [Vibrio alginolyticus 12G01], gi\|91190045\|gb\|EAS76316...	156.0	[0..18]	[135..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIISQVFSP EGQRVLTMQF TKWFIALPLA VTALSGCSLL ERLVYRIDIN QGNYVDQQSV  60
   61 DQLKFGMSKD QVRFVLGSPM LVENGYPDTW YYIYHHTQGH NDPVQKNLIV KFNDGGKLVN 120
  121 VAGDFPAGDS FFEGVN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.0
Match:	PF04355.4
Description:	No description for PF04355.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits