YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229894435, gi...
Organism:	Yersinia pestis Pestoides A
Length:	1221 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229894435, gi....

Description	E-value	Query Range	Subject Range
gi\|89102257 - gi\|89102257\|ref\|ZP_01174905.1\| COG1530: Ribonucleases G and E [Yersinia pestis biovar Orientalis str...	0.0	[4..1221]	[1..1218]
gi\|108775848, gi... - gi\|229902525\|ref\|ZP_04517644.1\| RNase E [Yersinia pestis Nepal516], gi\|229680571\|gb\|EEO76668.1\| RNas... gi\|167427020, gi... - gi\|167427020\|ref\|ZP_02318773.1\| ribonuclease E [Yersinia pestis biovar Mediaevalis str. K1973002], g... gi\|22125643, gi\|... - gi\|22125643\|ref\|NP_669066.1\| ribonuclease E [Yersinia pestis KIM], gi\|21958554\|gb\|AAM85317.1\|AE01377... gi\|145599138, gi... - gi\|145599138\|ref\|YP_001163214.1\| ribonuclease E [Yersinia pestis Pestoides F], gi\|145210834\|gb\|ABP40...	0.0	[1..1221]	[1..1216]
gi\|117673235, gi... - gi\|77629539\|ref\|ZP_00792125.1\| COG1530: Ribonucleases G and E [Yersinia pseudotuberculosis IP 31758]...	0.0	[4..1221]	[1..1213]
gi\|51590083, gi\|... - gi\|51596801\|ref\|YP_070992.1\| ribonuclease E [Yersinia pseudotuberculosis IP 32953], gi\|51590083\|emb\|... Q669K5\|Q669K5_YERPS - Ribonuclease E - Yersinia pseudotuberculosis	0.0	[1..1221]	[1..1230]
gi\|77958126 - gi\|77958126\|ref\|ZP_00822165.1\| COG1530: Ribonucleases G and E [Yersinia bercovieri ATCC 43970]	0.0	[4..500]	[1..497]
gi\|82408258, gi\|... - gi\|82408258\|pdb\|2C4R\|L Chain L, Catalytic Domain Of E. Coli Rnase E, gi\|82408201\|pdb\|2C0B\|L Chain L,...	0.0	[1..510]	[8..517]
gi\|33504214, gi\|... - gi\|33519869\|ref\|NP_878701.1\| ribonuclease E [Candidatus Blochmannia floridanus], gi\|33504214\|emb\|CAD...	0.0	[1..523]	[1..522]
gi\|94676970, gi\|... - gi\|94676970\|ref\|YP_588881.1\| ribonuclease E [Baumannia cicadellinicola str. Hc (Homalodisca coagulat...	0.0	[1..534]	[2..533]
RNE_BUCAP - Ribonuclease E OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rne PE=3 SV=1 RNE_BUCAP - Ribonuclease E OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=rne PE=3 SV=1	0.0	[1..548]	[1..548]

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Predicted Domain #1

Region A:
Residues: [1-526]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRMLINATQ QEELRVALVD GQRLYDLDIE SPGHEQKKAN IYKGKITRIE PSLEAAFVDY  60
   61 GAERHGFLPL KEISREYFPN NYSSHGRPNI KDVLREGQEV IVQVDKEERG NKGAALTTFI 120
  121 SLAGSYLVLM PNNPRAGGIS RRIEGDDRTE LKEALSSLQL PDGMGLIVRT AGVGKSADAL 180
  181 QWDLSFRLKH WDAIKKAAEG RPAPFLIHQE SNVIVRAFRD YLRPDIGEIL IDNPKVLELA 240
  241 KEHIAALGRP DFSSKIKLYS GEIPLFSHYQ IESQIESAFQ REVRLPSGGS IVIDTTEALT 300
  301 AIDINSARAT RGGDIEETAF NTNLEAADEI ARQLRLRDLG GLIVIDFIDM TPVRHQREVE 360
  361 NRLRDAVRQD RARIQIGRIS RFGLLEMSRQ RLSPSLGESS HHVCPRCSGT GTVRDNESLS 420
  421 LSILRLIEEE ALKENTHEVH AIVPVQIASY LLNEKRESVN AIEKRQGGVR AVIVPNDQMQ 480
  481 TPHYSVLRVR KGEEVPSLSY LLPQLHEAEM AQPLEEATIE RKRPEQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2bx2L
Description:	Catalytic domain of E. coli RNase E
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [527-877]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PALATFSLPT EVPPEEAPTV AKAKPAVATP AAVSTDVEQP GFFSRLFSGL KNMFGASAEA  60
   61 EVQPAEVVKT DTSENRRNDR RNPRRQNNGR KERNDRTPRE GRDNSSRDNT NRDNTNRDNT 120
  121 SRDNANRDGA NRDNSNRDNS GRDNVSREGR EDQRRNNRRP AQPTTTSQGQ TEVVEADKAQ 180
  181 REEQPQRRGD RQRRRQDEKR QAPQEIKADV AEAPVIEEVQ PEQEERQQVM QRRQRRQLNQ 240
  241 KVRIQSANDE LNTLESPVSA PVAQVVVAEV QEEVKLLPQI TAQTDDDSAN ERTTNNENGM 300
  301 PRRSRRSPRH LRVSGQRRRR YRDERYPAQS AMPLAGAFAS PEMASGKVWV R

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.78
Match:	1dv4A
Description:	30S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [878-1221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YPVTPVVEQV VVEQIAIEQT TTVEQTAIVE QVSVANIVTA QLPVEQVQNT VAEQESSATP  60
   61 SVMTTPTVAV ATAAVTLAPQ HKPGGSSSSA AAVPGRAPIV AAVPVVAETT AAETVVAKTE 120
  121 AAIDAVAVVE PMAAVESIAA VETATVEPVV TEEPNVTEPA VAEPAIETDP VEETTSVVEI 180
  181 APTVEPTPMI EDTAVVVAAT VVDTTPETAS TVQDDIVEET AVEAVNISET VAEETAITEP 240
  241 AAEAIATQQT TIAQETIAEP TVETAIDVVA VVKQPAVAHP EGVVFKHFAS APMTKAPAPD 300
  301 YAPESPTKGH WERPTFDFSG KGSAGGHAAA TQATAPATKP QSVE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.31
Match:	1h1kI
Description:	THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits