YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229693589, gi...
Organism:	Yersinia pestis biovar Orientalis str. PEXU2
Length:	610 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229693589, gi....

Description	E-value	Query Range	Subject Range
UVRC_ECOBW - UvrABC system protein C OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=uvrC PE=3 SV=1 gi\|253324179, gi... - gi\|253773135\|ref\|YP_003035966.1\| excinuclease ABC, C subunit [Escherichia coli BL21(DE3)], gi\|253324... gi\|254793563, gi... - gi\|254793563\|ref\|YP_003078400.1\| excinuclease UvrABC, endonuclease subunit [Escherichia coli O157:H7... gi\|194421508, gi... - gi\|83585049\|ref\|ZP_00923703.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... UVRC_ECO24 - UvrABC system protein C OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=uvrC PE=3 SV=1 UVRC_ECO7I - UvrABC system protein C OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=uvrC PE=3 SV=1 UVRC_ECO55 - UvrABC system protein C OS=Escherichia coli (strain 55989 / EAEC) GN=uvrC PE=3 SV=1 UVRC_ECOLU - UvrABC system protein C OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=uvrC PE=3 SV=1 UVRC_ECOLI - UvrABC system protein C (Protein uvrC) (Excinuclease ABC subunit C) - Escherichia coli UVRC_SHISS - UvrABC system protein C OS=Shigella sonnei (strain Ss046) GN=uvrC PE=3 SV=2 UVRC_ECOL6 - UvrABC system protein C OS=Escherichia coli O6 GN=uvrC PE=3 SV=1 sp\|B7UST2\|UVRC_ECO27 - UvrABC system protein C OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=uvrC PE=3 SV=1 gi\|89108748, gi\|... - gi\|89108748\|ref\|AP_002528.1\| excinuclease UvrABC, endonuclease subunit [Escherichia coli str. K-12 s... gi\|38704033 - gi\|38704033\|ref\|NP_310678.2\| excinuclease ABC subunit C [Escherichia coli O157:H7 str. Sakai] UVRC_ECOL6 - UvrABC system protein C OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=uvrC PE=3 ... UVRC_ECO57 - UvrABC system protein C OS=Escherichia coli O157:H7 GN=uvrC PE=3 SV=1 EG11063 - excinuclease UvrABC, endonuclease subunit / Excision nuclease subunit C; repair of UV damage to DNA;... gi\|208731333, gi... - gi\|208816990\|ref\|ZP_03258110.1\| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC4045], ... UVRC_ECODH - UvrABC system protein C OS=Escherichia coli (strain K12 / DH10B) GN=uvrC PE=3 SV=1 UVRC_ECOSE - UvrABC system protein C OS=Escherichia coli (strain SE11) GN=uvrC PE=3 SV=1 UVRC_ECO5E - UvrABC system protein C OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=uvrC PE=3 SV=1 gi\|217328731, gi... - gi\|217328731\|ref\|ZP_03444812.1\| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. TW14588],... UVRC_ECO27 - UvrABC system protein C OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=uvrC PE=3 SV=1 UVRC_ECO81 - UvrABC system protein C OS=Escherichia coli O81 (strain ED1a) GN=uvrC PE=3 SV=1 UVRC_ECO8A - UvrABC system protein C OS=Escherichia coli O8 (strain IAI1) GN=uvrC PE=3 SV=1 EG11063 - excinuclease UvrABC, endonuclease subunit / Excision nuclease subunit C; repair of UV damage to DNA;... UVRC_ECOHS - UvrABC system protein C OS=Escherichia coli O9:H4 (strain HS) GN=uvrC PE=3 SV=1 gi\|193071134, gi... - gi\|75233961\|ref\|ZP_00718414.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... gi\|191173286, gi... - gi\|75239189\|ref\|ZP_00723166.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... gi\|188495148, gi... - gi\|75511465\|ref\|ZP_00734140.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... gi\|161367590 - gi\|161367590\|ref\|NP_288374.2\| excinuclease ABC subunit C [Escherichia coli O157:H7 EDL933] gi\|189375231, gi... - gi\|189375231\|gb\|EDU93647.1\| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC508], gi\|16... gi\|189370222, gi... - gi\|189370222\|gb\|EDU88638.1\| excinuclease ABC, C subunit [Escherichia coli O157:H7 str. EC869], gi\|16... gi\|227837234, gi... - gi\|227885661\|ref\|ZP_04003466.1\| excinuclease ABC subunit C [Escherichia coli 83972], gi\|227837234\|gb...	0.0	[1..610]	[1..610]
gi\|192925962, gi... - gi\|75255512\|ref\|ZP_00727304.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... UVRC_ECOLC - UvrABC system protein C OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=uvrC PE=3 SV=1 gi\|194412021, gi... - gi\|75208839\|ref\|ZP_00709123.1\| COG0322: Nuclease subunit of the excinuclease complex [Escherichia co... gi\|124531455, gi... - gi\|124531455\|ref\|ZP_01701739.1\| excinuclease ABC, C subunit [Escherichia coli B], gi\|124498570\|gb\|EA... gi\|195182997 - gi\|195182997\|dbj\|BAG66563.1\| endonuclease subunit of excinuclease UvrABC [Escherichia coli O111:H-]	0.0	[1..610]	[1..610]
gi\|237705868, gi... - gi\|237705868\|ref\|ZP_04536349.1\| excinuclease ABC subunit C [Escherichia sp. 3_2_53FAA], gi\|226900625... UVRC_ECOUT - UvrABC system protein C OS=Escherichia coli (strain UTI89 / UPEC) GN=uvrC PE=3 SV=1	0.0	[1..610]	[1..610]
UVRC_SHIB3 - UvrABC system protein C OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=uvrC PE=3 SV=...	0.0	[1..610]	[1..610]
UVRC_ECOK1 - UvrABC system protein C OS=Escherichia coli O1:K1 / APEC GN=uvrC PE=3 SV=1	0.0	[1..610]	[1..610]
gi\|16760892 - gi\|16760892\|ref\|NP_456509.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar... UVRC_SALTI - UvrABC system protein C OS=Salmonella typhi GN=uvrC PE=3 SV=1 gi\|213426360 - gi\|213426360\|ref\|ZP_03359110.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero... gi\|213053517 - gi\|213053517\|ref\|ZP_03346395.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero... UVRC_SALTI - UvrABC system protein C OS=Salmonella typhi GN=uvrC PE=3 SV=1 gi\|29141416, gi\|... - gi\|29141416\|ref\|NP_804758.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica serovar... gi\|213999631 - gi\|213999631\|ref\|ZP_03410366.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero... gi\|213650332 - gi\|213650332\|ref\|ZP_03380385.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero... gi\|213580419 - gi\|213580419\|ref\|ZP_03362245.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero...	0.0	[1..610]	[1..610]
UVRC_SALPK - UvrABC system protein C OS=Salmonella paratyphi A (strain AKU_12601) GN=uvrC PE=3 SV=1 UVRC_SALPA - UvrABC system protein C OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=uvrC PE=3 SV=1 UVRC_SALPA - UvrABC system protein C OS=Salmonella paratyphi A GN=uvrC PE=3 SV=1	0.0	[1..610]	[1..610]
UVRC_YERPS - UvrABC system protein C OS=Yersinia pseudotuberculosis GN=uvrC PE=3 SV=1 UVRC_YERPS - UvrABC system protein C OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=uvrC PE=3 SV=1	0.0	[1..610]	[1..610]
UVRC_SALTY - UvrABC system protein C OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=uvrC PE=3... UVRC_SALTY - UvrABC system protein C OS=Salmonella typhimurium GN=uvrC PE=3 SV=2 UVRC_SALTY - UvrABC system protein C OS=Salmonella typhimurium GN=uvrC PE=3 SV=2	0.0	[1..610]	[1..610]
UVRC_SALPC - UvrABC system protein C OS=Salmonella paratyphi C (strain RKS4594) GN=uvrC PE=3 SV=1 UVRC_SALCH - UvrABC system protein C OS=Salmonella choleraesuis (strain SC-B67) GN=uvrC PE=3 SV=1 UVRC_SALCH - UvrABC system protein C OS=Salmonella choleraesuis GN=uvrC PE=3 SV=1 gi\|238912481 - gi\|238912481\|ref\|ZP_04656318.1\| excinuclease ABC subunit C [Salmonella enterica subsp. enterica sero... UVRC_SALCH - UvrABC system protein C OS=Salmonella choleraesuis GN=uvrC PE=3 SV=1	0.0	[1..610]	[1..610]

Back

Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLFDYKEF LKTVTSQPGV YRMYDTAGTV IYVGKAKDLK KRLTSYFRAQ VANRKTETLV  60
   61 KNIAQIDVTV THTETEALLL EHNYIKLYQP RYNVLLRD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	1yd6A
Description:	Crystal structure of the GIY-YIG N-terminal endonuclease domain of UvrC from Bacillus caldotenax
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [99-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKSYPLIFLS ADEHPRLAVH RGAKHEKGEY FGPFPNSYAV RETLALLQKL FPVRQCENSV  60
   61 YRNRSRPCLQ YQIGRCSGPC VEGLVSEEEY QRQVDYVRLF LSGKDQQVLT QLITRMEEAS 120
  121 QQLHFEDAAR IRDQIQAVRR VTEQQF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.0
Match:	2d7dA
Description:	No description for 2d7dA was found.

Predicted Domain #3

Region A:
Residues: [245-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSGDSEDLDV IGVAFDAGLA CVHVLFIRLG KVLGSRSYFP KVPAGTELSE VVQTFVGQFY  60
   61 LQGSQGRTLP GEILLDFTLT EKDLLASSLS ELAG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [339-610]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKIQIQSRPR GDRARYLKLA RTNASTALIT RLSQQSTIHQ RMKELAKVLK LDEINRMECF  60
   61 DISHTMGEQT VASCVVFDAN GPVRSEYRRY NISGITPGDD YAAMAQVLKR RYGKALDDQK 120
  121 IPDVIFIDGG KGQLSQAFDV FASLNVPWDK QKPLLVGVAK GSDRKAGLET LFLASEGEGF 180
  181 SLPPDSPALH LIQHIRDDSH NHAITGHRQR RSKVKNTSAL EMIEGVGPKR RQVLLKYMGG 240
  241 LQPLFNASVE EIAKVPGISQ ALAEKIHNAL KH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.522879
Match:	2nrtA
Description:	No description for 2nrtA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits