YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229701942, gi...
Organism:	Yersinia pestis Pestoides A
Length:	370 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229701942, gi....

Description	E-value	Query Range	Subject Range
gi\|22125855, gi\|... - gi\|22125855\|ref\|NP_669278.1\| hypothetical protein y1963 [Yersinia pestis KIM], gi\|21958787\|gb\|AAM855... gi\|45436813, gi\|... - gi\|45441950\|ref\|NP_993489.1\| hypothetical protein YP_2158 [Yersinia pestis biovar Microtus str. 9100... gi\|162354585, gi... - gi\|162421770\|ref\|YP_001606968.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis Angola], gi\|16...	0.0	[1..370]	[15..384]
gi\|165938545, gi... - gi\|89103785\|ref\|ZP_01176349.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol... gi\|117673417, gi... - gi\|77629357\|ref\|ZP_00791943.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol... gi\|166207663, gi... - gi\|166210483\|ref\|ZP_02236518.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Antiqua ... gi\|167400920, gi... - gi\|167400920\|ref\|ZP_02306426.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Antiqua ... gi\|165926440, gi... - gi\|165926440\|ref\|ZP_02222272.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Oriental... gi\|165990446, gi... - gi\|166010744\|ref\|ZP_02231642.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Antiqua ... gi\|166958979, gi... - gi\|167422167\|ref\|ZP_02313920.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Oriental... gi\|167425060, gi... - gi\|167425060\|ref\|ZP_02316813.1\| anhydro-N-acetylmuramic acid kinase [Yersinia pestis biovar Mediaeva... gi\|77633731 - gi\|77633731\|ref\|ZP_00795850.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol...	0.0	[1..370]	[8..377]
ANMK_PHOLL - Anhydro-N-acetylmuramic acid kinase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 /... ANMK_PHOLL - Anhydro-N-acetylmuramic acid kinase OS=Photorhabdus luminescens subsp. laumondii GN=anmK PE=3 SV=1	0.0	[1..369]	[3..371]
gi\|77979551 - gi\|77979551\|ref\|ZP_00834969.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol...	0.0	[1..369]	[8..376]
ANMK_PASMU - Anhydro-N-acetylmuramic acid kinase OS=Pasteurella multocida GN=anmK PE=3 SV=1 ANMK_PASMU - Anhydro-N-acetylmuramic acid kinase OS=Pasteurella multocida (strain Pm70) GN=anmK PE=3 SV=1	0.0	[1..366]	[1..370]
gi\|238787155, gi... - gi\|77975315\|ref\|ZP_00830851.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol...	0.0	[1..369]	[1..369]
gi\|46155957, gi\|... - gi\|46155957\|ref\|ZP_00133605.2\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol...	0.0	[4..366]	[18..384]
ANMK_SHIF8 - Anhydro-N-acetylmuramic acid kinase OS=Shigella flexneri serotype 5b (strain 8401) GN=anmK PE=3 SV=1	0.0	[1..369]	[1..369]
gi\|77961707, gi\|... - gi\|77961707\|ref\|ZP_00825539.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol...	0.0	[1..368]	[1..368]
gi\|238716521, gi... - gi\|77959179\|ref\|ZP_00823201.1\| COG2377: Predicted molecular chaperone distantly related to HSP70-fol...	0.0	[1..369]	[1..369]

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Predicted Domain #1

Region A:
Residues: [1-370]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSGRFIGVM SGTSLDGVDV VLAAIDERMV AQQASYTHPI PLQLKKDILG MCQGQSTTLS  60
   61 AVGKLDAQLG ILFAEAVLAL LAKEGLSAQD ITAIGCHGQT VWHEPLGEPA FTMQLGDNNR 120
  121 IAAMTQIATV GDFRRRDMAY GGQGAPLVPA FHHALLAHAT EKRMVLNIGG IANLSVLLPD 180
  181 SPIRGFDTGP GNMLMDAWIW RNCSLPYDKD ACWALSGHVN QPLLEQMFND PYFRLPAPKS 240
  241 TGREYFNAAW LDKQLARIPG VTAEDIQATL AELTAVSITE QVRLAGGCDR LLVCGGGARN 300
  301 PLVMARISAL LSGTEVCTTD DAGIRGDDME ALAFAWLAFR TLSGKPGNLP SVTGASRETI 360
  361 LGAVHPVSSW

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.48
Match:	1huxA
Description:	Hydroxyglutaryl-CoA dehydratase component A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits