YRC Public Data Repository - Protein Structure Prediction

Protein:	SOM1_KLULA
Organism:	Kluyveromyces lactis NRRL Y-1140
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SOM1_KLULA.

Description	E-value	Query Range	Subject Range
gi\|190405508 - gi\|190405508\|gb\|EDV08775.1\| protein SOM1, mitochondrial precursor [Saccharomyces cerevisiae RM11-1a] gi\|151944653 - gi\|151944653\|gb\|EDN62912.1\| mitochondrial inner membrane peptidase subunit [Saccharomyces cerevisiae... SOM1_YEAST - Protein SOM1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SOM1 PE=1 SV... SOM1 - Subunit of the mitochondrial inner membrane peptidase, which is required for maturation of mitochond...	113.0	[0..1]	[70..1]
gi\|44981456 - gi\|44981456\|gb\|AAS51241.1\| ACR014Cp [Ashbya gossypii ATCC 10895] gi\|44981456, gi\|... - gi\|45185701\|ref\|NP_983417.1\| ACR014Cp [Ashbya gossypii ATCC 10895], gi\|44981456\|gb\|AAS51241.1\| ACR01...	107.0	[0..1]	[70..1]
gi\|46432890, gi\|... - gi\|68489205\|ref\|XP_711577.1\| hypothetical protein CaO19.6359 [Candida albicans SC5314], gi\|68489066\|... gi\|14970729 - gi\|14970729\|emb\|CAC44450.1\| SOM1 protein [Candida albicans]	96.0	[0..1]	[70..1]
gi\|49654358, gi\|... - gi\|50420315\|ref\|XP_458691.1\| hypothetical protein DEHA0D05951g [Debaryomyces hansenii CBS767], gi\|49...	96.0	[0..1]	[70..1]

Back

Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPTKILGL DTQQRMLQRG ENCSLKSLVQ NECAFNGNDY VCTPFKRLFE QCMVKDGRVL  60
   61 NIEVTNLNTN R

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.555	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.466	a.108.1	Ribosomal protein L7/12, oligomerisation (N-terminal) domain
View	Download	0.479	d.58.23	Probable ACP-binding domain of malonyl-CoA ACP transacylase
View	Download	0.477	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.468	a.4.5	"Winged helix" DNA-binding domain

Predicted functions:

Term	Confidence	Notes
binding	2.25407691717348	bayes_pls_golite062009
transcription regulator activity	1.42515866225969	bayes_pls_golite062009
nucleic acid binding	1.26366048863035	bayes_pls_golite062009
DNA binding	1.16420176302838	bayes_pls_golite062009
protein binding	0.602273936284589	bayes_pls_golite062009
transcription factor activity	0.602174091266498	bayes_pls_golite062009
hydrolase activity	0.511123422363152	bayes_pls_golite062009
signal transducer activity	0.0422473967103505	bayes_pls_golite062009
molecular transducer activity	0.0422473967103505	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: