YRC Public Data Repository - Protein Structure Prediction

Protein:	DAPH_OCEIH
Organism:	Oceanobacillus iheyensis
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPH_OCEIH.

Description	E-value	Query Range	Subject Range
DAPH_BACCN - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Bacillus cytotoxicus (strain DSM...	167.0	[0..1]	[235..3]
gi\|89085984, gi\|... - gi\|89099375\|ref\|ZP_01172252.1\| YkuQ [Bacillus sp. NRRL B-14911], gi\|89085984\|gb\|EAR65108.1\| YkuQ [Ba...	165.0	[0..1]	[234..3]
DAPH_LISIV - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Listeria ivanovii GN=dapH PE=3 S...	161.0	[0..2]	[234..4]
gi\|16078482, gi\|... - gi\|2633789\|emb\|CAB13291.1\| ykuQ [Bacillus subtilis subsp. subtilis str. 168], gi\|16078482\|ref\|NP_389... gi\|7475869, gi\|8... - gi\|81556009\|sp\|O34981.1\|DAPH_BACSU RecName: Full=2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acet...	156.0	[0..1]	[234..3]
gi\|133733271, gi... - gi\|254936022\|ref\|ZP_05267719.1\| hypothetical protein LmonF6_02785 [Listeria monocytogenes F6900], gi... DAPH_LISMO - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Listeria monocytogenes GN=dapH P... gi\|224500743 - gi\|224500743\|ref\|ZP_03669092.1\| hypothetical protein LmonF1_14141 [Listeria monocytogenes Finland 19... gi\|224502674 - gi\|224502674\|ref\|ZP_03670981.1\| hypothetical protein LmonFR_09164 [Listeria monocytogenes FSL R2-561... gi\|255016843 - gi\|255016843\|ref\|ZP_05288969.1\| hypothetical protein LmonF_01451 [Listeria monocytogenes FSL F2-515] gi\|255027624 - gi\|255027624\|ref\|ZP_05299610.1\| hypothetical protein LmonocytFSL_16987 [Listeria monocytogenes FSL J... gi\|153185853, gi... - gi\|254898815\|ref\|ZP_05258739.1\| hypothetical protein LmonJ_03340 [Listeria monocytogenes J0161], gi\|... gi\|127633012, gi... - gi\|254832243\|ref\|ZP_05236898.1\| hypothetical protein Lmon1_12894 [Listeria monocytogenes 10403S], gi... gi\|47096343, gi\|... - gi\|47096343\|ref\|ZP_00233939.1\| 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putat... gi\|127766099, gi... - gi\|254911696\|ref\|ZP_05261708.1\| hypothetical protein LmonJ2_02780 [Listeria monocytogenes J2818], gi... DAPH_LISMO - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Listeria monocytogenes serovar 1... gi\|254827956, gi... - gi\|254827956\|ref\|ZP_05232643.1\| hypothetical protein LmonocytogeFSL_05800 [Listeria monocytogenes FS...	156.0	[0..2]	[234..4]
gi\|254872946 - gi\|254872946\|ref\|ZP_05245656.1\| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [... DAPH_LISMH - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Listeria monocytogenes serotype ... DAPH_LISW6 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Listeria welshimeri serovar 6b (... DAPH_LISIN - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Listeria innocua serovar 6a (str... DAPH_LISIN - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Listeria innocua GN=dapH PE=3 SV...	155.0	[0..2]	[234..4]
DAPH_BACLD - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Bacillus licheniformis (strain A...	154.0	[0..1]	[234..3]
DAPH_GEOKA - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Geobacillus kaustophilus (strain... gi\|229330970, gi... - gi\|229498280\|ref\|ZP_04391977.1\| Tetrahydrodipicolinate succinyltransferase domain protein [Geobacill... DAPH_GEOKA - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Geobacillus kaustophilus GN=dapH...	153.0	[0..1]	[234..3]
gi\|228850096, gi... - gi\|228909807\|ref\|ZP_04073630.1\| Tetrahydrodipicolinate succinylase [Bacillus thuringiensis IBL 200],... DAPH_BACC4 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Bacillus cereus (strain B4264) G... gi\|228799419, gi... - gi\|228960244\|ref\|ZP_04121900.1\| Tetrahydrodipicolinate succinylase [Bacillus thuringiensis serovar p... DAPH_BACCR - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Bacillus cereus (strain ATCC 145... DAPH_BACC2 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Bacillus cereus (strain G9842) G... gi\|228805385, gi... - gi\|228954257\|ref\|ZP_04116284.1\| Tetrahydrodipicolinate succinylase [Bacillus thuringiensis serovar k... gi\|228941142, gi... - gi\|228941142\|ref\|ZP_04103697.1\| Tetrahydrodipicolinate succinylase [Bacillus thuringiensis serovar b... gi\|206733908, gi... - gi\|206971136\|ref\|ZP_03232087.1\| putative 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfer... gi\|228922732, gi... - gi\|228922732\|ref\|ZP_04086030.1\| Tetrahydrodipicolinate succinylase [Bacillus thuringiensis serovar h... gi\|228711652, gi... - gi\|229071482\|ref\|ZP_04204703.1\| Tetrahydrodipicolinate succinylase [Bacillus cereus F65185], gi\|2287... gi\|229047668, gi... - gi\|229047668\|ref\|ZP_04193254.1\| Tetrahydrodipicolinate succinylase [Bacillus cereus AH676], gi\|22872... gi\|228779071, gi... - gi\|228980667\|ref\|ZP_04140974.1\| Tetrahydrodipicolinate succinylase [Bacillus thuringiensis Bt407], g... gi\|228974074, gi... - gi\|228974074\|ref\|ZP_04134646.1\| Tetrahydrodipicolinate succinylase [Bacillus thuringiensis serovar t... gi\|229146553, gi... - gi\|229146553\|ref\|ZP_04274923.1\| Tetrahydrodipicolinate succinylase [Bacillus cereus BDRD-ST24], gi\|2... gi\|228654185, gi... - gi\|229129259\|ref\|ZP_04258231.1\| Tetrahydrodipicolinate succinylase [Bacillus cereus BDRD-Cer4], gi\|2... gi\|228671835, gi... - gi\|229111453\|ref\|ZP_04241004.1\| Tetrahydrodipicolinate succinylase [Bacillus cereus Rock1-15], gi\|22... gi\|229081233, gi... - gi\|229081233\|ref\|ZP_04213742.1\| Tetrahydrodipicolinate succinylase [Bacillus cereus Rock4-2], gi\|228... gi\|229192189, gi... - gi\|229192189\|ref\|ZP_04319156.1\| Tetrahydrodipicolinate succinylase [Bacillus cereus ATCC 10876], gi\|... gi\|229180256, gi... - gi\|229180256\|ref\|ZP_04307600.1\| Tetrahydrodipicolinate succinylase [Bacillus cereus 172560W], gi\|228... gi\|228620797, gi... - gi\|229162915\|ref\|ZP_04290872.1\| Tetrahydrodipicolinate succinylase [Bacillus cereus R309803], gi\|228... gi\|228631143, gi... - gi\|229152181\|ref\|ZP_04280374.1\| Tetrahydrodipicolinate succinylase [Bacillus cereus m1550], gi\|22863...	152.0	[0..1]	[235..3]
gi\|228717655, gi... - gi\|229061648\|ref\|ZP_04198987.1\| Tetrahydrodipicolinate succinylase [Bacillus cereus AH603], gi\|22871... gi\|228614734, gi... - gi\|229168722\|ref\|ZP_04296443.1\| Tetrahydrodipicolinate succinylase [Bacillus cereus AH621], gi\|22861... gi\|229134790, gi... - gi\|229134790\|ref\|ZP_04263598.1\| Tetrahydrodipicolinate succinylase [Bacillus cereus BDRD-ST196], gi\|... DAPH_BACWK - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase OS=Bacillus weihenstephanensis (str...	152.0	[0..1]	[235..3]

Back

Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDANEIIQF ISDSKKSTPV KVYVKGELDK LSASNTIKTF VDSKSGTIFG EWKDIQAYLE  60
   61 ENKSLIEDYI IENDRRNSAI PMLDLKNINA RIEPGAIIRD QVEIGDGAVI MMGASINIGS 120
  121 VIGEGTMIDM NAVLGGRATV GKNCHIGAGS VLAGVIEPPS AKPVIVEDDV VIGANVVILE 180
  181 GITVGKGSIV AAGSIVTKDV APNTLVGGTP AKVLKEIDEQ TKSKTEIKQE LRKLDN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.045757
Match:	1hv9A
Description:	N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain; N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.59855937987599	bayes_pls_golite062009
transferase activity, transferring acyl groups other than amino-acyl groups	2.00406253837813	bayes_pls_golite062009
acyltransferase activity	1.97801068671318	bayes_pls_golite062009
transferase activity, transferring acyl groups	1.94103020303346	bayes_pls_golite062009
transferase activity	1.3237300007392	bayes_pls_golite062009
O-acyltransferase activity	1.15494456676161	bayes_pls_golite062009
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity	0.94437024014042	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: