YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254901165
Organism:	Listeria monocytogenes J0161
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254901165.

Description	E-value	Query Range	Subject Range
gi\|46908544, gi\|... - gi\|46908544\|ref\|YP_014933.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogenes ...	153.0	[0..1]	[104..1]
gi\|47095852, gi\|... - gi\|47095852\|ref\|ZP_00233456.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogene... gi\|127764552, gi... - gi\|153192012\|ref\|ZP_01939078.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen... gi\|133731868, gi... - gi\|153180475\|ref\|ZP_01933518.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen... gi\|153175605, gi... - gi\|153175605\|ref\|ZP_01930933.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen...	152.0	[0..1]	[104..42]
gi\|47017094, gi\|... - gi\|47094531\|ref\|ZP_00232197.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogene...	145.0	[0..1]	[104..26]
gi\|16414994, gi\|... - pir\|\|AC1741 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB component homolog lin... gi\|16801534 - gi\|16801534\|ref\|NP_471802.1\| hypothetical protein lin2472 [Listeria innocua Clip11262]	144.0	[0..1]	[104..1]
gi\|229351162, gi... - gi\|229511197\|ref\|ZP_04400676.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae B33], ... gi\|197751953, gi... - gi\|254286620\|ref\|ZP_04961576.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae AM-19... gi\|153819913, gi... - gi\|153819913\|ref\|ZP_01972580.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae NCTC ... gi\|149739622, gi... - gi\|153826610\|ref\|ZP_01979277.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae MZO-2... gi\|227013198, gi... - gi\|227117748\|ref\|YP_002819644.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae O395... gi\|229608151, gi... - gi\|229608151\|ref\|YP_002878799.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae MJ-12... gi\|229521394, gi... - gi\|229521394\|ref\|ZP_04410813.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae TM 110... gi\|121586554, gi... - gi\|121586554\|ref\|ZP_01676340.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae 2740-... gi\|153212248, gi... - gi\|153212248\|ref\|ZP_01948036.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae 1587]... gi\|121728832, gi... - gi\|121728832\|ref\|ZP_01681843.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae V52],... gi\|153801322, gi... - gi\|153801322\|ref\|ZP_01955908.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae MZO-3... gi\|229518316, gi... - gi\|229518316\|ref\|ZP_04407760.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae RC9], ... gi\|9655767, gi\|1... - gi\|9655767\|gb\|AAF94440.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae O1 biovar E... gi\|153222947, gi... - gi\|153222947\|ref\|ZP_01953554.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae MAK 7... gi\|229347426, gi... - gi\|229515657\|ref\|ZP_04405116.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae TMA 21... gi\|11280254 - pir\|\|D82219 PTS system, cellobiose-specific IIB component VC1281 [imported] - Vibrio cholerae (strai... gi\|125620828, gi... - gi\|254226659\|ref\|ZP_04920238.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae V51],... gi\|229505132, gi... - gi\|229505132\|ref\|ZP_04394642.1\| PTS system cellobiose-specific IIB component [Vibrio cholerae BX 330... gi\|254844110, gi... - gi\|254848405\|ref\|ZP_05237755.1\| PTS system protein [Vibrio cholerae MO10], gi\|254844110\|gb\|EET22524.... gi\|227009341, gi... - gi\|227081453\|ref\|YP_002810004.1\| PTS system, cellobiose-specific IIB component [Vibrio cholerae M66-...	134.0	[0..1]	[100..1]
PTJB_BACSU, PTCB... - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis GN=licB PE=1 SV=1, (P... PTJB_BACSU - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis (strain 168) GN=licB ... gi\|221321063 - gi\|221321063\|ref\|ZP_03602357.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone... gi\|221325348 - gi\|221325348\|ref\|ZP_03606642.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone... gi\|221316152 - gi\|221316152\|ref\|ZP_03597957.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone...	133.0	[0..3]	[98..2]
gi\|150019349, gi... - gi\|82746001\|ref\|ZP_00908510.1\| similar to cellobiose phosphotransferase enzyme IIB component [Clostr...	133.0	[0..1]	[100..1]
gi\|89086742, gi\|... - gi\|89098497\|ref\|ZP_01171380.1\| PTS system, cellobiose-specific IIB component [Bacillus sp. NRRL B-14...	133.0	[0..3]	[103..21]
gi\|224502334 - gi\|224502334\|ref\|ZP_03670641.1\| hypothetical protein LmonFR_07404 [Listeria monocytogenes FSL R2-561... gi\|16802419 - gi\|16802419\|ref\|NP_463904.1\| hypothetical protein lmo0374 [Listeria monocytogenes EGD-e] gi\|255028871 - gi\|255028871\|ref\|ZP_05300822.1\| hypothetical protein LmonL_06226 [Listeria monocytogenes LO28] gi\|16409752, gi\|... - pir\|\|AG1121 PTS betaglucoside-specific enzyme IIB component homolog lmo0374 [imported] - Listeria mo...	132.0	[0..1]	[100..1]
gi\|29376316, gi\|... - gi\|29376316\|ref\|NP_815470.1\| PTS system, IIB component, putative [Enterococcus faecalis V583], gi\|29...	131.0	[0..2]	[104..4]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIVLVCAA GMSTSLLVTK MRKAAEERGE TCEIEAYSIA EVSNLIDDAD VVLLGPQVRY  60
   61 QKKTVDELAA GKIPVDVIDM AAYGTMNGEK VLGQALDLIN GFQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.045757
Match:	1h9cA
Description:	Enzyme IIB-cellobiose
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.08041453921791	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.49138214292642	bayes_pls_golite062009
glucoside transmembrane transporter activity	1.83892097143526	bayes_pls_golite062009
sugar transmembrane transporter activity	1.77053981674308	bayes_pls_golite062009
transporter activity	1.6837050020547	bayes_pls_golite062009
transmembrane transporter activity	1.5685227361887	bayes_pls_golite062009
substrate-specific transporter activity	1.32293422112884	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.217268678967	bayes_pls_golite062009
active transmembrane transporter activity	1.12964417923438	bayes_pls_golite062009
monosaccharide transmembrane transporter activity	0.71593290802554	bayes_pls_golite062009
catalytic activity	0.676259875978821	bayes_pls_golite062009
beta-glucoside transmembrane transporter activity	0.50967675887857	bayes_pls_golite062009
binding	0.472595683811139	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.37663629577414	bayes_pls_golite062009
fructose transmembrane transporter activity	0.225562559709031	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0296784994545702	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: