YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229896238, gi...
Organism:	Yersinia pestis Pestoides A
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229896238, gi....

Description	E-value	Query Range	Subject Range
gi\|108812487, gi... - gi\|108812487\|ref\|YP_648254.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis... gi\|108807169, gi... - gi\|108807169\|ref\|YP_651085.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis... gi\|145598614, gi... - gi\|145598614\|ref\|YP_001162690.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pes...	3.0E-66	[1..232]	[20..251]
gi\|166210809, gi... - gi\|166210809\|ref\|ZP_02236844.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|166010841, gi... - gi\|166010841\|ref\|ZP_02231739.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|166961938, gi... - gi\|167420243\|ref\|ZP_02311996.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|167049407, gi... - gi\|167401018\|ref\|ZP_02306521.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|162352268, gi... - gi\|77636012\|ref\|ZP_00798090.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia p... gi\|167469716 - gi\|167469716\|ref\|ZP_02334420.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis F... gi\|167425844, gi... - gi\|167425844\|ref\|ZP_02317597.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|22126394, gi\|... - gi\|22126394\|ref\|NP_669817.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis ... gi\|45441413, gi\|... - gi\|45441413\|ref\|NP_992952.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis ... gi\|89105476, gi\|... - gi\|89105476\|ref\|ZP_01177995.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia p... gi\|165926043, gi... - gi\|165926043\|ref\|ZP_02221875.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b...	3.0E-66	[1..232]	[23..254]
gi\|117673903, gi... - gi\|77628870\|ref\|ZP_00791456.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia p...	5.0E-66	[1..232]	[23..254]
gi\|51589289, gi\|... - gi\|51596007\|ref\|YP_070198.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudot... Q66BU6\|Q66BU6_YERPS - Flagella basal body P-ring formation protein FlgA precursor - Yersinia pseudotuberculosis	1.0E-65	[1..232]	[1..232]
gi\|77975730, gi\|... - gi\|77975730\|ref\|ZP_00831264.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia f...	3.0E-64	[1..232]	[1..226]
gi\|238799103, gi... - gi\|77960291\|ref\|ZP_00824170.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia m...	7.0E-62	[1..232]	[9..234]
gi\|77979940, gi\|... - gi\|77979940\|ref\|ZP_00835356.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia i...	2.0E-61	[1..232]	[1..226]
gi\|238785501, gi... - gi\|77957056\|ref\|ZP_00821123.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia b...	1.0E-60	[1..232]	[9..234]
FLGA_YEREN - Flagella basal body P-ring formation protein FlgA OS=Yersinia enterocolitica GN=flgA PE=3 SV=1	2.0E-59	[3..232]	[1..224]
gi\|25323453 - gi\|25323453\|pir\|\|A84969 hypothetical protein flgA [imported] - Buchnera sp. (strain APS) FLGA_BUCAI - Flagella basal body P-ring formation protein FlgA OS=Buchnera aphidicola subsp. Acyrthosiphon pisum ... FLGA_BUCAI - Flagella basal body P-ring formation protein flgA OS=Buchnera aphidicola subsp. Acyrthosiphon pisum ...	2.0E-58	[1..230]	[1..224]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVKRKNIII VALGLLLSHH ILAQQTLAAH QALETDLSVQ VNQFFQQQYS DKESQVKVVI  60
   61 KTPQNQWPQC DAPEITLPAN ARPWGNISLS VRC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [94-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGLRRFIQTQ VQVSGRYAVA VRRLAAGEKI SAQDIQMKQG RLDTLPPGAL LDAHFAQGAV  60
   61 SQRQINAGQP LTRNMLRRLW LVKAGQDVPV LAQGDGFNVN SNGKAMNNGA AQETIRVRMP 120
  121 SGQIVSGTVA DDGTIRIML

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.7
Match:	1wvoA
Description:	Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits