YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229194489, gi...
Organism:	Bacillus cereus m1293
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229194489, gi....

Description	E-value	Query Range	Subject Range
gi\|229329198, gi... - gi\|229499919\|ref\|ZP_04393596.1\| ribosomal protein L10 [Geobacillus sp. Y412MC52], gi\|229329198\|gb\|EE... gi\|220706737, gi... - gi\|221089311\|ref\|ZP_03558831.1\| ribosomal protein L10 [Geobacillus sp. Y412MC61], gi\|220706737\|gb\|EE... RL10_GEOKA - 50S ribosomal protein L10 OS=Geobacillus kaustophilus (strain HTA426) GN=rplJ PE=3 SV=1 RL10_GEOKA - 50S ribosomal protein L10 OS=Geobacillus kaustophilus GN=rplJ PE=3 SV=1	6.0E-45	[1..166]	[1..166]
RL10_OCEIH - 50S ribosomal protein L10 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HT... RL10_OCEIH - 50S ribosomal protein L10 OS=Oceanobacillus iheyensis GN=rplJ PE=3 SV=1	6.0E-44	[1..166]	[1..166]
gi\|52078598, gi\|... - gi\|52078598\|ref\|YP_077389.1\| 50S ribosomal protein L10 [Bacillus licheniformis ATCC 14580], gi\|52001...	6.0E-44	[1..166]	[9..174]
RL10_STAAS - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain MSSA476) GN=rplJ PE=3 SV=1	8.0E-44	[1..165]	[1..165]
RL10_STAAN - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain N315) GN=rplJ PE=1 SV=1 RL10_STAAW - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain MW2) GN=rplJ PE=3 SV=1 RL10_STAAM - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplJ PE=3 SV=1 RL10_STAA2 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain JH1) GN=rplJ PE=3 SV=1 RL10_STAA9 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain JH9) GN=rplJ PE=3 SV=1 gi\|227557413, gi... - gi\|227557413\|ref\|ZP_03987460.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus MN8],... gi\|227852233, gi... - gi\|227899470\|ref\|ZP_04017275.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus TCH60... RL10_STAAT - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplJ PE=3 SV=1 gi\|251802990, gi... - gi\|251813488\|ref\|ZP_04827961.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus TCH70... RL10_STAAC - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain COL) GN=rplJ PE=3 SV=1 gi\|253315649 - gi\|253315649\|ref\|ZP_04838862.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus str. ... gi\|253731144, gi... - gi\|253731144\|ref\|ZP_04865309.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus USA30... gi\|253729476, gi... - gi\|253732547\|ref\|ZP_04866712.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus TCH13... gi\|255005333 - gi\|255005333\|ref\|ZP_05143934.2\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus Mu50-... gi\|269202162\|ref... - 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus ED98] RL10_STAA8 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplJ PE=3 SV=1 RL10_STAA3 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain USA300) GN=rplJ PE=3 SV=1 RL10_STAAB - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rplJ PE=3 SV=1 RL10_STAAR - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain MRSA252) GN=rplJ PE=3 SV=1 gi\|87126714\|gb\|A... - ribosomal protein L10 [Staphylococcus aureus subsp. aureus USA300], ribosomal protein L10 [Staphyloc... gi\|221139612 - gi\|221139612\|ref\|ZP_03564411.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus str. ... gi\|25295127 - pir\|\|E89821 50S ribosomal protein L10 [imported] - Staphylococcus aureus (strain N315) gi\|221141024 - gi\|221141024\|ref\|ZP_03565517.1\| 50S ribosomal protein L10 [Staphylococcus aureus subsp. aureus str. ... RL10_STAA1 - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=rplJ PE=3 SV=1 RL10_STAAE - 50S ribosomal protein L10 OS=Staphylococcus aureus (strain Newman) GN=rplJ PE=3 SV=1	2.0E-43	[1..165]	[1..165]
RL10_BACCR - 50S ribosomal protein L10 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N... gi\|229125616, gi... - gi\|229125616\|ref\|ZP_04254648.1\| 50S ribosomal protein L10 [Bacillus cereus BDRD-Cer4], gi\|228657808\|...	3.0E-43	[1..166]	[1..166]
RL10_BACSK - 50S ribosomal protein L10 OS=Bacillus clausii (strain KSM-K16) GN=rplJ PE=3 SV=1	3.0E-43	[1..166]	[1..166]
gi\|228751630, gi... - gi\|229009608\|ref\|ZP_04166834.1\| 50S ribosomal protein L10 [Bacillus mycoides DSM 2048], gi\|228751630... gi\|228652319, gi... - gi\|229131106\|ref\|ZP_04260018.1\| 50S ribosomal protein L10 [Bacillus cereus BDRD-ST196], gi\|228652319... gi\|228721363, gi... - gi\|229053945\|ref\|ZP_04195379.1\| 50S ribosomal protein L10 [Bacillus cereus AH603], gi\|228721363\|gb\|E... gi\|229165087, gi... - gi\|229165087\|ref\|ZP_04292882.1\| 50S ribosomal protein L10 [Bacillus cereus AH621], gi\|228618350\|gb\|E... RL10_BACWK - 50S ribosomal protein L10 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplJ PE=3 SV=1	4.0E-43	[1..166]	[1..166]
gi\|242241871, gi... - gi\|242241871\|ref\|ZP_04796316.1\| 50S ribosomal protein L10 [Staphylococcus epidermidis W23144], gi\|24... gi\|251809956, gi... - gi\|251809956\|ref\|ZP_04824429.1\| 50S ribosomal protein L10 [Staphylococcus epidermidis BCM-HMP0060], ... RL10_STAEP - (Q8CTT2) 50S ribosomal protein L10 RL10_STAES - 50S ribosomal protein L10 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rplJ PE=3 SV=1 RL10_STAEQ - 50S ribosomal protein L10 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rplJ PE=3 SV=...	5.0E-43	[1..165]	[1..165]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVIETKQQ VVTEIADKLR ASKSTIVVDY RGLTVSEATE LRKQLREAGV EFKVYKNSLT  60
   61 RRAAESAEMA ELNEFLTGPN AIAFSNEDVV APAKVLNDFA KDHEALEIKA GVIEGKLVTL 120
  121 DEVKAIATLP SREGLLSMLL SVLQAPIRNL ALATKAVADQ KEEQGA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.221849
Match:	1zavA
Description:	Ribosomal Protein L10-L12(NTD) Complex, Space Group P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.21399440705185	bayes_pls_golite062009
structural molecule activity	8.64272477066313	bayes_pls_golite062009
binding	0.883379158418688	bayes_pls_golite062009
protein binding	0.184314459922274	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: