YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227082833, gi...
Organism:	Vibrio cholerae M66-2
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227082833, gi....

Description	E-value	Query Range	Subject Range
gi\|116221312, gi... - gi\|75820619\|ref\|ZP_00750662.1\| COG1040: Predicted amidophosphoribosyltransferases [Vibrio cholerae V...	222.0	[0..22]	[286..1]
gi\|75830644, gi\|... - gi\|75830644\|ref\|ZP_00759918.1\| COG1040: Predicted amidophosphoribosyltransferases [Vibrio cholerae M... gi\|75815860 - gi\|75815860\|ref\|ZP_00746350.1\| COG1040: Predicted amidophosphoribosyltransferases [Vibrio cholerae V... gi\|75827962 - gi\|75827962\|ref\|ZP_00757397.1\| COG1040: Predicted amidophosphoribosyltransferases [Vibrio cholerae O...	222.0	[0..22]	[286..1]
gi\|116217932, gi... - gi\|75824752\|ref\|ZP_00754198.1\| COG1040: Predicted amidophosphoribosyltransferases [Vibrio cholerae R...	219.0	[0..22]	[286..1]
gi\|28272056, gi\|... - gi\|28379217\|ref\|NP_786109.1\| amidophosphoribosyltransferase [Lactobacillus plantarum WCFS1], gi\|2827... gi\|254557349, gi... - gi\|254557349\|ref\|YP_003063766.1\| amidophosphoribosyltransferase [Lactobacillus plantarum JDM1], gi\|2...	179.0	[0..18]	[286..128]
gi\|83588949, gi\|... - gi\|83588949\|ref\|YP_428958.1\| ribose-phosphate pyrophosphokinase [Moorella thermoacetica ATCC 39073],...	170.0	[0..22]	[283..8]
gi\|20806995, gi\|... - gi\|20806995\|ref\|NP_622166.1\| amidophosphoribosyltransferase [Thermoanaerobacter tengcongensis MB4], ... gi\|20806995 - gi\|20806995\|ref\|NP_622166.1\| predicted amidophosphoribosyltransferase [Thermoanaerobacter tengcongen... gi\|214035204, gi... - gi\|254478842\|ref\|ZP_05092207.1\| Phosphoribosyl transferase domain protein [Carboxydibrachium pacific...	162.0	[0..59]	[276..3]
gi\|67778428, gi\|... - gi\|91787189\|ref\|YP_548141.1\| ribose-phosphate pyrophosphokinase [Polaromonas sp. JS666], gi\|91696414...	161.0	[0..22]	[283..1]
gi\|25288326 - pir\|\|AF2389 ribose-phosphate pyrophosphokinase [imported] - Nostoc sp. (strain PCC 7120) KPRS_NOSS1 - Ribose-phosphate pyrophosphokinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=prs PE=3 SV=1	161.0	[0..24]	[284..17]
gi\|157104790, gi... - gi\|157104790\|ref\|XP_001648570.1\| ribose-phosphate pyrophosphokinase 1, putative [Aedes aegypti], gi\|...	160.0	[0..27]	[284..38]
gi\|68534248, gi\|... - gi\|68534248\|gb\|AAH98599.1\| Prps1a protein [Danio rerio], gi\|126541101\|emb\|CAM46942.1\| phosphoribosyl...	160.0	[0..27]	[283..2]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQPCTNTRS CPCPLTCQYN AMVTVSPSIS IFIHSANWQD EAHYPDSWLA MLTHWLRKTT  60
   61 APLLTPECHL CRLALDTNSP FGVCSACQAW LEHGYRCARC GLPTLTPVDQ CGQCLGQPPP 120
  121 WRKLMCVGDY RFPLSDAVHQ LKYQRQFWQA PRLAKLLATQ INEPAPLLCS VPLHWRRRWQ 180
  181 RGFNQSDLLA RELANMLNVE YDHQLFARRR ATPHQQGLSK AQRIHNLRDA FVLNHPPNQP 240
  241 HVAIVDDVVT TGSTIRHLCD LLLDVGVQSI DIYCICRTPE PKDSHG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.522879
Match:	1dkrA
Description:	Phosphoribosylpyrophosphate synthetase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.13215401486422	bayes_pls_golite062009
transferase activity	2.01480567121657	bayes_pls_golite062009
diphosphotransferase activity	1.2980439591794	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	0.899227917236164	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.782718700399924	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: