YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227518396, gi...
Organism:	Enterococcus faecalis TX0104
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227518396, gi....

Description	E-value	Query Range	Subject Range
gi\|22127977, gi\|... - gi\|22127977\|ref\|NP_671400.1\| sugar phosphatase [Yersinia pestis KIM], gi\|21961122\|gb\|AAM87651.1\|AE01... gi\|45443724, gi\|... - gi\|45443724\|ref\|NP_995263.1\| sugar phosphatase [Yersinia pestis biovar Microtus str. 91001], gi\|4543...	195.0	[0..1]	[268..28]
gi\|16799375 - gi\|16799375\|ref\|NP_469643.1\| hypothetical protein lin0298 [Listeria innocua Clip11262] gi\|25303672, gi\|... - pir\|\|AC1470 conserved hypothetical protein B. subtilis YxeH protein homolog lin0298 [imported] - Lis...	194.0	[0..3]	[269..2]
gi\|224585630, gi... - gi\|224585630\|ref\|YP_002639429.1\| hypothetical protein SPC_3918 [Salmonella enterica subsp. enterica ... gi\|206710860, gi... - gi\|207859057\|ref\|YP_002245708.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Ente... gi\|197241280, gi... - gi\|197263025\|ref\|ZP_03163099.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Saintp... gi\|194403742, gi... - gi\|194445079\|ref\|YP_002043081.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Newpo... gi\|168260385, gi... - gi\|205350165\|gb\|EDZ36796.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Hadar str.... gi\|62182319, gi\|... - gi\|62182319\|ref\|YP_218736.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Cholerae... gi\|205325651, gi... - gi\|205325651\|gb\|EDZ13490.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Saintpaul ... gi\|161616948, gi... - gi\|161616948\|ref\|YP_001590913.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Para...	194.0	[0..1]	[269..1]
gi\|224502434 - gi\|224502434\|ref\|ZP_03670741.1\| hypothetical protein LmonFR_07924 [Listeria monocytogenes FSL R2-561... gi\|16802318 - gi\|16802318\|ref\|NP_463803.1\| hypothetical protein lmo0272 [Listeria monocytogenes EGD-e] gi\|16409637, gi\|... - pir\|\|AI1108 B. subtilis YxeH protein homolog lmo0272 [imported] - Listeria monocytogenes (strain EGD...	194.0	[0..3]	[269..2]
gi\|47096361, gi\|... - gi\|47096361\|ref\|ZP_00233956.1\| hydrolase, haloacid dehalogenase-like family [Listeria monocytogenes ... gi\|254900539, gi... - gi\|254900539\|ref\|ZP_05260463.1\| hypothetical protein LmonJ_12014 [Listeria monocytogenes J0161], gi\|... gi\|254937909, gi... - gi\|254937909\|ref\|ZP_05269606.1\| hypothetical protein LmonF6_12304 [Listeria monocytogenes F6900], gi... gi\|127766706, gi... - gi\|254913510\|ref\|ZP_05263522.1\| hypothetical protein LmonJ2_11964 [Listeria monocytogenes J2818], gi...	193.0	[0..3]	[269..2]
gi\|167992424, gi... - gi\|205329366\|gb\|EDZ16130.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar 4,[5],12:i... gi\|16422404, gi\|... - gi\|16767116\|ref\|NP_462731.1\| sugar phosphatase [Salmonella typhimurium LT2], gi\|16422404\|gb\|AAL22690... lcl\|NC_016856.1_... - [gene=yidA] [protein=sugar phosphatase] [protein_id=YP_005240097.1] [location=complement(4047898..40...	193.0	[0..1]	[269..1]
gi\|51591505, gi\|... - gi\|51598223\|ref\|YP_072414.1\| sugar phosphatase [Yersinia pseudotuberculosis IP 32953], gi\|51591505\|e... gi\|77630962, gi\|... - gi\|77630962\|ref\|ZP_00793548.1\| COG0561: Predicted hydrolases of the HAD superfamily [Yersinia pseudo... Q663T6\|Q663T6_YERPS - Putative haloacid dehalogenase-like hydrolase - Yersinia pseudotuberculosis gi\|186893349, gi... - gi\|186893349\|ref\|YP_001870461.1\| sugar phosphatase [Yersinia pseudotuberculosis PB1/+], gi\|186696375...	193.0	[0..1]	[268..1]
gi\|167470733 - gi\|167470733\|ref\|ZP_02335437.1\| predicted hydrolase [Yersinia pestis FV-1] gi\|167055514, gi... - gi\|167425500\|ref\|ZP_02317253.1\| Cof-like hydrolase [Yersinia pestis biovar Mediaevalis str. K1973002... gi\|162351471, gi... - gi\|77632974\|ref\|ZP_00795136.1\| COG0561: Predicted hydrolases of the HAD superfamily [Yersinia pestis... gi\|165922067, gi... - gi\|165926207\|ref\|ZP_02222039.1\| Cof-like hydrolase [Yersinia pestis biovar Orientalis str. F1991016]... gi\|166213191, gi... - gi\|166213191\|ref\|ZP_02239226.1\| Cof-like hydrolase [Yersinia pestis biovar Antiqua str. B42003004], ... gi\|165991377, gi... - gi\|166009455\|ref\|ZP_02230353.1\| Cof-like hydrolase [Yersinia pestis biovar Antiqua str. E1979001], g... gi\|167422866, gi... - gi\|167422866\|ref\|ZP_02314619.1\| Cof-like hydrolase [Yersinia pestis biovar Orientalis str. MG05-1020... gi\|167401593, gi... - gi\|167401593\|ref\|ZP_02307087.1\| Cof-like hydrolase [Yersinia pestis biovar Antiqua str. UG05-0454], ... gi\|25303670 - pir\|\|AC0497 probable haloacid dehalogenase-like hydrolase YPO4093 [imported] - Yersinia pestis (stra... gi\|218931070, gi... - gi\|218931070\|ref\|YP_002348945.1\| sugar phosphatase [Yersinia pestis CO92], gi\|16124202\|ref\|NP_407515... gi\|108810129, gi... - gi\|108810129\|ref\|YP_654045.1\| sugar phosphatase [Yersinia pestis Antiqua], gi\|108782042\|gb\|ABG16100.... gi\|108777759, gi... - gi\|229904650\|ref\|ZP_04519761.1\| multifunctional Erythrose 4-P, mannose 1-P, and alpha-D-glucose-1-P ... gi\|229013117 - gi\|229013117\|ref\|NP_671400.2\| sugar phosphatase [Yersinia pestis KIM] gi\|229220772 - gi\|229220772\|ref\|NP_995263.2\| sugar phosphatase [Yersinia pestis biovar Microtus str. 91001] gi\|149290380, gi... - gi\|150260972\|ref\|ZP_01917700.1\| putative haloacid dehalogenase-like hydrolase [Yersinia pestis CA88-... gi\|229839800, gi... - gi\|229839800\|ref\|ZP_04459959.1\| multifunctional Erythrose 4-P, mannose 1-P, and alpha-D-glucose-1-P ... gi\|145597329, gi... - gi\|145597329\|ref\|YP_001161404.1\| sugar phosphatase [Yersinia pestis Pestoides F], gi\|145209025\|gb\|AB... gi\|229691223, gi... - gi\|229841884\|ref\|ZP_04462040.1\| multifunctional Erythrose 4-P, mannose 1-P, and alpha-D-glucose-1-P ... gi\|89105223, gi\|... - gi\|89105223\|ref\|ZP_01177746.1\| COG0561: Predicted hydrolases of the HAD superfamily [Yersinia pestis... gi\|229700200, gi... - gi\|229896762\|ref\|ZP_04511925.1\| multifunctional Erythrose 4-P, mannose 1-P, and alpha-D-glucose-1-P ...	193.0	[0..1]	[268..1]
gi\|46906513, gi\|... - gi\|46906513\|ref\|YP_012902.1\| HAD superfamily hydrolase [Listeria monocytogenes str. 4b F2365], gi\|46... gi\|47020086, gi\|... - gi\|47091409\|ref\|ZP_00229206.1\| hydrolase, haloacid dehalogenase-like family [Listeria monocytogenes ... gi\|133736481, gi... - gi\|254932499\|ref\|ZP_05265858.1\| hypothetical protein LmonH_08708 [Listeria monocytogenes HPB2262], g... gi\|254825676 - gi\|254825676\|ref\|ZP_05230677.1\| hypothetical protein LmonFS_10939 [Listeria monocytogenes FSL J1-194... gi\|226222908, gi... - gi\|226222908\|ref\|YP_002757015.1\| hypothetical protein Lm4b_00300 [Listeria monocytogenes Clip81459],... gi\|255520774 - gi\|255520774\|ref\|ZP_05388011.1\| hypothetical protein LmonocFSL_06026 [Listeria monocytogenes FSL J1-... gi\|254993193 - gi\|254993193\|ref\|ZP_05275383.1\| hypothetical protein LmonocytoFSL_09283 [Listeria monocytogenes FSL ...	192.0	[0..3]	[269..2]
gi\|213416496 - gi\|213416496\|ref\|ZP_03349640.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Typhi... gi\|213424958 - gi\|213424958\|ref\|ZP_03357708.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Typhi... gi\|213581440 - gi\|213581440\|ref\|ZP_03363266.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Typhi... gi\|213609652 - gi\|213609652\|ref\|ZP_03369478.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Typhi... gi\|29139618, gi\|... - gi\|29143982\|ref\|NP_807324.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Typhi st... gi\|197291630, gi... - gi\|197291630\|gb\|EDY30982.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Schwarzeng... gi\|16762494 - gi\|16762494\|ref\|NP_458111.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Typhi st... gi\|194737423, gi... - gi\|194737423\|ref\|YP_002116775.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Schwa... gi\|204321906, gi... - gi\|204928473\|ref\|ZP_03219672.1\| phosphatase YidA [Salmonella enterica subsp. enterica serovar Javian... gi\|25303684, gi\|... - gi\|25303684\|pir\|\|AH0958 conserved hypothetical protein STY3947 [imported] - Salmonella enterica subs... gi\|213052915 - gi\|213052915\|ref\|ZP_03345793.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Typhi... gi\|213647468 - gi\|213647468\|ref\|ZP_03377521.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Typhi... gi\|213980624 - gi\|213980624\|ref\|ZP_03407883.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Typhi... gi\|214001459 - gi\|214001459\|ref\|ZP_03412194.1\| sugar phosphatase [Salmonella enterica subsp. enterica serovar Typhi...	191.0	[0..1]	[269..1]

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Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIKLVAIDI DGTLLNSQHK ITPRVKEALQ KANEQGVRIV LCTGRPLPGV KEQLDELALY  60
   61 GENDFVITYN GSLVQATKDN TIISRYTLSY EDFLEIEMYS RKVGAHLHTI DDSAIYTANR 120
  121 NIGKYTIHEA SLVNMPLKYR TVDEMTPEMN IIKMMMIDEP EVLDPAIAKL PLHFTEKYTT 180
  181 VKSTPFYYEI MNKNASKGNA LAKLADHLGL NKDEVMAIGD NENDLSMIDY AGIGVAMGNA 240
  241 TENVKTIADV HTTSNDEDGV AQIIEKMVLI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.045757
Match:	1rkqA
Description:	Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55296860681783	bayes_pls_golite062009
hydrolase activity	0.996930438913923	bayes_pls_golite062009
phosphatase activity	0.0985887286442809	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.0342238658800214	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: