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View Structure Prediction Details

Protein: gi|229305979, gi...
Organism: Enterococcus faecalis ATCC 29200
Length: 108 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229305979, gi....

Description E-value Query
Range
Subject
Range
gi|29376316, gi|... - gi|29376316|ref|NP_815470.1| PTS system, IIB component, putative [Enterococcus faecalis V583], gi|29...
144.0 [0..1] [108..1]
gi|69245658, gi|... - gi|69245658|ref|ZP_00603571.1| Phosphotransferase system, lactose/cellobiose-specific IIB subunit [E...
gi|48825537 - ref|ZP_00286783.1| COG1440: Phosphotransferase system cellobiose-specific component IIB [Enterococcu...
141.0 [0..1] [106..1]
gi|46908544, gi|... - gi|46908544|ref|YP_014933.1| PTS system, cellobiose-specific, IIB component [Listeria monocytogenes ...
139.0 [0..3] [105..1]
gi|42518278, gi|... - gi|42518278|ref|NP_964208.1| phosphoenolpyruvate-dependent sugar phosphotransferase system EIIB, cel...
139.0 [0..1] [107..1]
gi|47095852, gi|... - gi|47095852|ref|ZP_00233456.1| PTS system, cellobiose-specific, IIB component [Listeria monocytogene...
gi|127764552, gi... - gi|153192012|ref|ZP_01939078.1| PTS system, cellobiose-specific, IIB component [Listeria monocytogen...
gi|133731868, gi... - gi|153180475|ref|ZP_01933518.1| PTS system, cellobiose-specific, IIB component [Listeria monocytogen...
gi|153175605, gi... - gi|153175605|ref|ZP_01930933.1| PTS system, cellobiose-specific, IIB component [Listeria monocytogen...
138.0 [0..3] [105..42]
gi|78609608, gi|... - gi|81427967|ref|YP_394966.1| putative cellobiose-specific phosphotransferase system, enzyme IIB [Lac...
138.0 [0..1] [105..1]
gi|229351162, gi... - gi|229511197|ref|ZP_04400676.1| PTS system cellobiose-specific IIB component [Vibrio cholerae B33], ...
gi|197751953, gi... - gi|254286620|ref|ZP_04961576.1| PTS system, cellobiose-specific IIB component [Vibrio cholerae AM-19...
gi|153819913, gi... - gi|153819913|ref|ZP_01972580.1| PTS system, cellobiose-specific IIB component [Vibrio cholerae NCTC ...
gi|149739622, gi... - gi|153826610|ref|ZP_01979277.1| PTS system, cellobiose-specific IIB component [Vibrio cholerae MZO-2...
gi|227013198, gi... - gi|227117748|ref|YP_002819644.1| PTS system, cellobiose-specific IIB component [Vibrio cholerae O395...
gi|229608151, gi... - gi|229608151|ref|YP_002878799.1| PTS system cellobiose-specific IIB component [Vibrio cholerae MJ-12...
gi|229521394, gi... - gi|229521394|ref|ZP_04410813.1| PTS system cellobiose-specific IIB component [Vibrio cholerae TM 110...
gi|121586554, gi... - gi|121586554|ref|ZP_01676340.1| PTS system, cellobiose-specific IIB component [Vibrio cholerae 2740-...
gi|153212248, gi... - gi|153212248|ref|ZP_01948036.1| PTS system, cellobiose-specific IIB component [Vibrio cholerae 1587]...
gi|121728832, gi... - gi|121728832|ref|ZP_01681843.1| PTS system, cellobiose-specific IIB component [Vibrio cholerae V52],...
gi|153801322, gi... - gi|153801322|ref|ZP_01955908.1| PTS system, cellobiose-specific IIB component [Vibrio cholerae MZO-3...
gi|229518316, gi... - gi|229518316|ref|ZP_04407760.1| PTS system cellobiose-specific IIB component [Vibrio cholerae RC9], ...
gi|9655767, gi|1... - gi|9655767|gb|AAF94440.1| PTS system, cellobiose-specific IIB component [Vibrio cholerae O1 biovar E...
gi|153222947, gi... - gi|153222947|ref|ZP_01953554.1| PTS system, cellobiose-specific IIB component [Vibrio cholerae MAK 7...
gi|229347426, gi... - gi|229515657|ref|ZP_04405116.1| PTS system cellobiose-specific IIB component [Vibrio cholerae TMA 21...
gi|11280254 - pir||D82219 PTS system, cellobiose-specific IIB component VC1281 [imported] - Vibrio cholerae (strai...
gi|125620828, gi... - gi|254226659|ref|ZP_04920238.1| PTS system, cellobiose-specific IIB component [Vibrio cholerae V51],...
gi|229505132, gi... - gi|229505132|ref|ZP_04394642.1| PTS system cellobiose-specific IIB component [Vibrio cholerae BX 330...
gi|254844110, gi... - gi|254848405|ref|ZP_05237755.1| PTS system protein [Vibrio cholerae MO10], gi|254844110|gb|EET22524....
gi|227009341, gi... - gi|227081453|ref|YP_002810004.1| PTS system, cellobiose-specific IIB component [Vibrio cholerae M66-...
137.0 [0..3] [105..1]
PTJB_BACSU, PTCB... - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis GN=licB PE=1 SV=1, (P...
PTJB_BACSU - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis (strain 168) GN=licB ...
gi|221321063 - gi|221321063|ref|ZP_03602357.1| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone...
gi|221325348 - gi|221325348|ref|ZP_03606642.1| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone...
gi|221316152 - gi|221316152|ref|ZP_03597957.1| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone...
136.0 [0..4] [103..1]

Back

Predicted Domain #1
Region A:
Residues: [1-108]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKKTIMLVC SAGMSTSLLV TKMQKAAEDR GMEADIFAVS ASEADTNLEN KEVNVLLLGP  60
   61 QVRFMKGQFE QKLQPKGIPL DVINMADYGM MNGEKVLDQA ISLMGSSN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.522879
Match: 1h9cA
Description: Enzyme IIB-cellobiose
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity 5.08041453921791 bayes_pls_golite062009
carbohydrate transmembrane transporter activity 4.49138214292642 bayes_pls_golite062009
glucoside transmembrane transporter activity 1.83892097143526 bayes_pls_golite062009
sugar transmembrane transporter activity 1.77053981674308 bayes_pls_golite062009
transporter activity 1.6837050020547 bayes_pls_golite062009
transmembrane transporter activity 1.5685227361887 bayes_pls_golite062009
substrate-specific transporter activity 1.32293422112884 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 1.217268678967 bayes_pls_golite062009
active transmembrane transporter activity 1.12964417923438 bayes_pls_golite062009
monosaccharide transmembrane transporter activity 0.71593290802554 bayes_pls_golite062009
catalytic activity 0.676259875978821 bayes_pls_golite062009
beta-glucoside transmembrane transporter activity 0.50967675887857 bayes_pls_golite062009
binding 0.472595683811139 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.37663629577414 bayes_pls_golite062009
fructose transmembrane transporter activity 0.225562559709031 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.0296784994545702 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle