YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229304245, gi...
Organism:	Enterococcus faecalis ATCC 29200
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229304245, gi....

Description	E-value	Query Range	Subject Range
gi\|48824748 - ref\|ZP_00286087.1\| COG0203: Ribosomal protein L17 [Enterococcus faecium] gi\|69247196, gi\|... - gi\|69247196\|ref\|ZP_00604258.1\| Ribosomal protein L17 [Enterococcus faecium DO], gi\|68194961\|gb\|EAN09... gi\|293570710\|ref... - ribosomal protein L17 [Enterococcus faecium E980]	186.0	[0..1]	[126..1]
RL17_BACSK - 50S ribosomal protein L17 OS=Bacillus clausii (strain KSM-K16) GN=rplQ PE=3 SV=1	184.0	[0..1]	[126..1]
RL17_BACLD - 50S ribosomal protein L17 OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12...	184.0	[0..1]	[126..1]
gi\|77161387, gi\|... - gi\|77412564\|ref\|ZP_00788856.1\| ribosomal protein L17 [Streptococcus agalactiae CJB111], gi\|77161387\|...	184.0	[0..1]	[126..1]
gi\|221312278 - gi\|221312278\|ref\|ZP_03594083.1\| 50S ribosomal protein L17 [Bacillus subtilis subsp. subtilis str. NC... RL17_BACSU - 50S ribosomal protein L17 OS=Bacillus subtilis (strain 168) GN=rplQ PE=1 SV=2 gi\|221317212 - gi\|221317212\|ref\|ZP_03598506.1\| 50S ribosomal protein L17 [Bacillus subtilis subsp. subtilis str. JH... RL17_BACSU - 50S ribosomal protein L17 OS=Bacillus subtilis GN=rplQ PE=3 SV=2 gi\|221321475 - gi\|221321475\|ref\|ZP_03602769.1\| 50S ribosomal protein L17 [Bacillus subtilis subsp. subtilis str. SM...	182.0	[0..1]	[126..1]
RL17_STRA3 - 50S ribosomal protein L17 OS=Streptococcus agalactiae serotype III (strain NEM316) GN=rplQ PE=3 SV=1 RL17_STRA5 - 50S ribosomal protein L17 OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) GN... RL17_STRA1 - 50S ribosomal protein L17 OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS... RL17_STRA5 - 50S ribosomal protein L17 OS=Streptococcus agalactiae serotype V GN=rplQ PE=3 SV=1 gi\|77414961, gi\|... - gi\|77414961\|ref\|ZP_00791054.1\| ribosomal protein L17 [Streptococcus agalactiae 515], gi\|77158990\|gb\|... RL17_STRA3 - 50S ribosomal protein L17 OS=Streptococcus agalactiae serotype III GN=rplQ PE=3 SV=1 gi\|77171536, gi\|... - gi\|77409856\|ref\|ZP_00786489.1\| ribosomal protein L17 [Streptococcus agalactiae COH1], gi\|77171536\|gb... RL17_STRA1 - 50S ribosomal protein L17 OS=Streptococcus agalactiae serotype Ia GN=rplQ PE=3 SV=1 gi\|77175297, gi\|... - gi\|77406116\|ref\|ZP_00783190.1\| ribosomal protein L17 [Streptococcus agalactiae H36B], gi\|77175297\|gb... gi\|76586442, gi\|... - gi\|76798233\|ref\|ZP_00780483.1\| ribosomal protein L17 [Streptococcus agalactiae 18RS21], gi\|76586442\|...	182.0	[0..1]	[126..1]
gi\|89084940, gi\|... - gi\|89100319\|ref\|ZP_01173184.1\| 50S ribosomal protein L17 [Bacillus sp. NRRL B-14911], gi\|89084940\|gb...	182.0	[0..1]	[126..1]
gi\|220706776, gi... - gi\|221089350\|ref\|ZP_03558870.1\| ribosomal protein L17 [Geobacillus sp. Y412MC61], gi\|220706776\|gb\|EE... gi\|229500503, gi... - gi\|229500503\|ref\|ZP_04394164.1\| ribosomal protein L17 [Geobacillus sp. Y412MC52], gi\|229328620\|gb\|EE... RL17_GEOKA - 50S ribosomal protein L17 OS=Geobacillus kaustophilus GN=rplQ PE=3 SV=1 RL17_GEOKA - 50S ribosomal protein L17 OS=Geobacillus kaustophilus (strain HTA426) GN=rplQ PE=3 SV=1	181.0	[0..1]	[126..1]
RL17_GEOSE - 50S ribosomal protein L17 OS=Geobacillus stearothermophilus GN=rplQ PE=1 SV=2	181.0	[0..1]	[126..1]
RL17_PEDPA - 50S ribosomal protein L17 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rplQ PE=3 SV=1	180.0	[0..1]	[127..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYRKLGRTS SQRKAMLRDI TTDLIINERI VTTEARAKEV RSTVEKMITL GKRGDLHARR  60
   61 QAATFVRNEV ASVREEDESI VVESALQKLF NDLGPRFAER QGGYTRILKT EPRRGDAAPM 120
  121 VVIEFVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	2gyaL
Description:	No description for 2gyaL was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits