YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|237803233, gi...
Organism:	Chlamydia trachomatis B/Jali20/OT
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|237803233, gi....

Description	E-value	Query Range	Subject Range
RS18_PSYA2 - 30S ribosomal protein S18 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rpsR PE=3 SV=1 RS18_PSYCK - 30S ribosomal protein S18 OS=Psychrobacter cryohalolentis (strain K5) GN=rpsR PE=3 SV=1	107.0	[0..10]	[80..3]
RS18_PSYWF - 30S ribosomal protein S18 OS=Psychrobacter sp. (strain PRwf-1) GN=rpsR PE=3 SV=1	107.0	[0..10]	[80..3]
RS18_KORVE - 30S ribosomal protein S18 OS=Koribacter versatilis (strain Ellin345) GN=rpsR PE=3 SV=1	106.0	[0..9]	[77..51]
RS18_BACCN - 30S ribosomal protein S18 OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	106.0	[0..5]	[80..2]
RS18_CHLMU - 30S ribosomal protein S18 OS=Chlamydia muridarum GN=rpsR PE=3 SV=2 RS18_CHLMU - 30S ribosomal protein S18 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rpsR PE=3 SV=2	105.0	[0..1]	[81..1]
RS18_BACST - (P10806) 30S ribosomal protein S18 (BS21) (BS19)	105.0	[0..17]	[81..13]
RS18_GEOKA - 30S ribosomal protein S18 OS=Geobacillus kaustophilus (strain HTA426) GN=rpsR PE=3 SV=1 gi\|229497916, gi... - gi\|229497916\|ref\|ZP_04391615.1\| ribosomal protein S18 [Geobacillus sp. Y412MC52], gi\|229331342\|gb\|EE... gi\|196249872, gi... - gi\|196249872\|ref\|ZP_03148568.1\| ribosomal protein S18 [Geobacillus sp. G11MC16], gi\|196210748\|gb\|EDY... gi\|221086943, gi... - gi\|221086943\|ref\|ZP_03556483.1\| ribosomal protein S18 [Geobacillus sp. Y412MC61], gi\|220708996\|gb\|EE... RS18_GEOTN - 30S ribosomal protein S18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsR PE=3 SV=2 RS18_GEOSE - 30S ribosomal protein S18 OS=Geobacillus stearothermophilus GN=rpsR PE=1 SV=2 RS18_GEOKA - 30S ribosomal protein S18 OS=Geobacillus kaustophilus GN=rpsR PE=3 SV=1	105.0	[0..17]	[81..14]
gi\|228271886, gi... - gi\|228474191\|ref\|ZP_04058928.1\| ribosomal protein S18 [Staphylococcus hominis SK119], gi\|228271886\|g... RS18_STAHJ - 30S ribosomal protein S18 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsR PE=3 SV=1	105.0	[0..15]	[81..13]
gi\|89084338, gi\|... - gi\|89100929\|ref\|ZP_01173776.1\| ribosomal protein S18 [Bacillus sp. NRRL B-14911], gi\|89084338\|gb\|EAR...	105.0	[0..17]	[81..17]
gi\|242349573, gi... - gi\|242372656\|ref\|ZP_04818230.1\| 30S ribosomal protein S18 [Staphylococcus epidermidis M23864:W1], gi... RS18_STAEP - (Q8CQP6) 30S ribosomal protein S18 RS18_STAEQ - 30S ribosomal protein S18 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpsR PE=3 SV=... gi\|223043454, gi... - gi\|223043454\|ref\|ZP_03613500.1\| ribosomal protein S18 [Staphylococcus capitis SK14], gi\|222443243\|gb... RS18_STAES - 30S ribosomal protein S18 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpsR PE=3 SV=1	104.0	[0..15]	[81..13]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRPVHNEHR RKRFAKKCPF VSAGWKTIDY KDVTTLKRFI TERGKILPRR ITGVSSRFQA  60
   61 LLAQAVKRAR HVGLLPFVGE D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	1p6gR
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits