YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|228844916, gi...
Organism:	Bacillus thuringiensis serovar pulsiensis BGSC 4CC1
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|228844916, gi....

Description	E-value	Query Range	Subject Range
gi\|217064653, gi... - gi\|217959481\|ref\|YP_002338033.1\| putative polysaccharide deacetylase [Bacillus cereus AH187], gi\|217... gi\|221239682, gi... - gi\|222095624\|ref\|YP_002529681.1\| polysaccharide deacetylase, putative [Bacillus cereus Q1], gi\|22123... gi\|228644623, gi... - gi\|229138707\|ref\|ZP_04267288.1\| Polysaccharide deacetylase [Bacillus cereus BDRD-ST26], gi\|228644623... gi\|47553481, gi\|... - gi\|47569835\|ref\|ZP_00240504.1\| peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus G9241]... gi\|228774592, gi... - gi\|228985105\|ref\|ZP_04145272.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar tochigien... gi\|229199619, gi... - gi\|229199619\|ref\|ZP_04326275.1\| Polysaccharide deacetylase [Bacillus cereus m1293], gi\|228583862\|gb\|... gi\|228627909, gi... - gi\|229155591\|ref\|ZP_04283699.1\| Polysaccharide deacetylase [Bacillus cereus ATCC 4342], gi\|228627909...	6.0E-65	[1..273]	[1..273]
gi\|42781129, gi\|... - gi\|42781129\|ref\|NP_978376.1\| polysaccharide deacetylase, putative [Bacillus cereus ATCC 10987], gi\|4...	6.0E-65	[1..273]	[1..273]
gi\|65319290, gi\|... - gi\|65319290\|ref\|ZP_00392249.1\| COG0726: Predicted xylanase/chitin deacetylase [Bacillus anthracis st...	3.0E-64	[1..273]	[1..273]
gi\|228656028, gi... - gi\|229127409\|ref\|ZP_04256403.1\| Polysaccharide deacetylase [Bacillus cereus BDRD-Cer4], gi\|228656028... gi\|228673964, gi... - gi\|229109467\|ref\|ZP_04239059.1\| Polysaccharide deacetylase [Bacillus cereus Rock1-15], gi\|228673964\|... gi\|229079181, gi... - gi\|229079181\|ref\|ZP_04211729.1\| Polysaccharide deacetylase [Bacillus cereus Rock4-2], gi\|228704107\|g... gi\|228713689, gi... - gi\|229069550\|ref\|ZP_04202839.1\| Polysaccharide deacetylase [Bacillus cereus F65185], gi\|228713689\|gb... gi\|229190106, gi... - gi\|229190106\|ref\|ZP_04317110.1\| Polysaccharide deacetylase [Bacillus cereus ATCC 10876], gi\|22859332... gi\|228605045, gi... - gi\|229178407\|ref\|ZP_04305775.1\| Polysaccharide deacetylase [Bacillus cereus 172560W], gi\|228605045\|g... gi\|228633208, gi... - gi\|229150236\|ref\|ZP_04278457.1\| Polysaccharide deacetylase [Bacillus cereus m1550], gi\|228633208\|gb\|... gi\|228638858, gi... - gi\|229144618\|ref\|ZP_04273020.1\| Polysaccharide deacetylase [Bacillus cereus BDRD-ST24], gi\|228638858... gi\|218230832, gi... - gi\|218230832\|ref\|YP_002366696.1\| putative polysaccharide deacetylase [Bacillus cereus B4264], gi\|218... gi\|29895663, gi\|... - gi\|30020113\|ref\|NP_831744.1\| peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus ATCC 145... gi\|228725570, gi... - gi\|229043769\|ref\|ZP_04191469.1\| Polysaccharide deacetylase [Bacillus cereus AH676], gi\|228725570\|gb\|... gi\|228781069, gi... - gi\|228978629\|ref\|ZP_04139001.1\| Polysaccharide deacetylase [Bacillus thuringiensis Bt407], gi\|228781... gi\|228972019, gi... - gi\|228972019\|ref\|ZP_04132636.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar thuringie... gi\|228939141, gi... - gi\|228939141\|ref\|ZP_04101735.1\| Polysaccharide deacetylase [Bacillus thuringiensis serovar berliner ...	2.0E-63	[1..273]	[1..273]
gi\|229264981, gi... - gi\|229600573\|ref\|YP_002867193.1\| polysaccharide deacetylase [Bacillus anthracis str. A0248], gi\|2292... gi\|227814252, gi... - gi\|227814252\|ref\|YP_002814261.1\| polysaccharide deacetylase [Bacillus anthracis str. CDC 684], gi\|22... gi\|30262903, gi\|... - gi\|30262903\|ref\|NP_845280.1\| polysaccharide deacetylase, putative [Bacillus anthracis str. Ames], gi... gi\|254742870 - gi\|254742870\|ref\|ZP_05200555.1\| polysaccharide deacetylase [Bacillus anthracis str. Kruger B] gi\|254737956 - gi\|254737956\|ref\|ZP_05195659.1\| polysaccharide deacetylase [Bacillus anthracis str. Western North Am... gi\|254722907 - gi\|254722907\|ref\|ZP_05184695.1\| polysaccharide deacetylase [Bacillus anthracis str. A1055] gi\|218904059, gi... - gi\|218904059\|ref\|YP_002451893.1\| polysaccharide deacetylase [Bacillus cereus AH820], gi\|218535880\|gb... gi\|254685500 - gi\|254685500\|ref\|ZP_05149360.1\| polysaccharide deacetylase [Bacillus anthracis str. CNEVA-9066] gi\|195995392, gi... - gi\|196032641\|ref\|ZP_03100055.1\| polysaccharide deacetylase [Bacillus cereus W], gi\|195995392\|gb\|EDX5... gi\|49479058, gi\|... - gi\|49479058\|ref\|YP_037009.1\| peptidoglycan N-acetylglucosamine deacetylase [Bacillus thuringiensis s... gi\|190565218, gi... - gi\|190565218\|ref\|ZP_03018138.1\| polysaccharide deacetylase [Bacillus anthracis Tsiankovskii-I], gi\|1... gi\|49185740, gi\|... - gi\|49185740\|ref\|YP_028992.1\| polysaccharide deacetylase, putative [Bacillus anthracis str. Sterne], ... gi\|177649265, gi... - gi\|177649265\|ref\|ZP_02932267.1\| polysaccharide deacetylase [Bacillus anthracis str. A0174], gi\|17208... gi\|254760788 - gi\|254760788\|ref\|ZP_05212812.1\| polysaccharide deacetylase [Bacillus anthracis str. Australia 94] gi\|47503384, gi\|... - gi\|47528236\|ref\|YP_019585.1\| polysaccharide deacetylase, putative [Bacillus anthracis str. 'Ames Anc... gi\|170670780, gi... - gi\|170685420\|ref\|ZP_02876644.1\| polysaccharide deacetylase [Bacillus anthracis str. A0465], gi\|17067... gi\|254752271 - gi\|254752271\|ref\|ZP_05204308.1\| polysaccharide deacetylase [Bacillus anthracis str. Vollum] gi\|167632026, gi... - gi\|167632026\|ref\|ZP_02390353.1\| polysaccharide deacetylase [Bacillus anthracis str. A0442], gi\|16753...	4.0E-53	[6..273]	[10..275]
gi\|89149695, gi\|... - gi\|89202277\|ref\|ZP_01181004.1\| Polysaccharide deacetylase [Bacillus cereus subsp. cytotoxis NVH 391-...	9.0E-53	[2..273]	[9..274]
gi\|163943311, gi... - gi\|89203990\|ref\|ZP_01182569.1\| Polysaccharide deacetylase [Bacillus weihenstephanensis KBAB4], gi\|89...	1.0E-52	[23..273]	[22..272]
gi\|51976050, gi\|... - gi\|52142581\|ref\|YP_084248.1\| peptidoglycan N-acetylglucosamine deacetylase [Bacillus cereus E33L], g...	1.0E-52	[6..273]	[10..275]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKAFKIKRV VFVLIAIAAV AIGYFMFQSI TSPAKAVAKQ ENVVQLASEQ PKVEMNKTAP  60
   61 SRFNGKERKV AYLTFDDGPG KYTAELLNTL KQHDAKATFF LIGANVKEFP DLVKRENAEG 120
  121 HYVGMHSMTH NFAKLYKNGE YVNEMKEDQS LIANIIGKSP KLTRPPYGSM PGLNEGLRNK 180
  181 VVEGGFKVWD WTIDSLDWKY NKMQVDAAAA QIAQNVLTNA TKPQEVILMH DIHPQSVAAV 240
  241 PAILKGLKEK GYEFEAYHEE SHFPVNFWHD NRM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.39794
Match:	2c1gA
Description:	Structure of Streptococcus pneumoniae peptidoglycan deacetylase ( SpPgdA)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.54926008475976	bayes_pls_golite062009
deacetylase activity	1.07373873416936	bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds	1.04159714419468	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	0.78725677170464	bayes_pls_golite062009
hydrolase activity	0.7139390771237	bayes_pls_golite062009
mannosidase activity	0.32530435999467	bayes_pls_golite062009
binding	0.097268039040833	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: