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View Structure Prediction Details

Protein: ATPD_LACJO
Organism: Lactobacillus johnsonii
Length: 182 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATPD_LACJO.

Description E-value Query
Range
Subject
Range
ATPD_GEOKA - ATP synthase subunit delta OS=Geobacillus kaustophilus (strain HTA426) GN=atpH PE=3 SV=1
ATPD_GEOKA - ATP synthase subunit delta OS=Geobacillus kaustophilus GN=atpH PE=3 SV=1
178.0 [0..3] [179..1]
gi|86283556, gi|... - gi|86359454|ref|YP_471346.1| F0F1 ATP synthase subunit delta [Rhizobium etli CFN 42], gi|86283556|gb...
177.0 [0..5] [180..55]
ATPD_VIBAL - ATP synthase subunit delta OS=Vibrio alginolyticus GN=atpH PE=3 SV=1
gi|116185028, gi... - gi|75855547|ref|ZP_00763195.1| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...
177.0 [0..7] [178..6]
gi|91226235, gi|... - gi|91226235|ref|ZP_01261075.1| F0F1 ATP synthase subunit delta [Vibrio alginolyticus 12G01], gi|9118...
177.0 [0..7] [178..6]
gi|77961819, gi|... - gi|77961819|ref|ZP_00825649.1| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...
176.0 [0..7] [178..6]
gi|37681438, gi|... - gi|37681438|ref|NP_936047.1| ATP synthase subunit D [Vibrio vulnificus YJ016], gi|37200190|dbj|BAC96...
176.0 [0..7] [178..10]
ATPD_VIBPA - ATP synthase subunit delta OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=atpH P...
ATPD_VIBPA - ATP synthase subunit delta OS=Vibrio parahaemolyticus GN=atpH PE=3 SV=1
176.0 [0..7] [178..6]
gi|238783019, gi... - gi|77958189|ref|ZP_00822227.1| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomy...
176.0 [0..7] [178..6]
gi|48824471 - ref|ZP_00285845.1| COG0712: F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitiv...
gi|68194707, gi|... - gi|69247778|ref|ZP_00604483.1| H+-transporting two-sector ATPase, delta (OSCP) subunit [Enterococcus...
175.0 [0..1] [178..1]
ATPD_VIBVU - ATP synthase subunit delta OS=Vibrio vulnificus GN=atpH PE=3 SV=1
ATPD_VIBVY - ATP synthase subunit delta OS=Vibrio vulnificus (strain YJ016) GN=atpH PE=3 SV=2
ATPD_VIBVU - ATP synthase subunit delta OS=Vibrio vulnificus (strain CMCP6) GN=atpH PE=3 SV=1
175.0 [0..7] [178..6]

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Predicted Domain #1
Region A:
Residues: [1-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSREEIAS RYSKALFAYA QDANSLDAVH EDMNVLLQVA KENPDMLRLL SDPIIRKNQK  60
   61 EEFLSSFSDK FSSETKNFLD FLLEYRRFES LTAIIEAFNT LYDEYKNIAS GTAVSAIKLN 120
  121 EDELSRISQA YAKKYGFKEL ILTNKVDPSI LGGIILKVGD RIIDGSIRTR LQQIREQLIE 180
  181 NR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.522879
Match: 1abvA
Description: N-TERMINAL DOMAIN OF THE DELTA SUBUNIT OF THE F1F0-ATP SYNTHASE FROM ESCHERICHIA COLI, NMR, MINIMIZED AVERAGE STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrogen ion transporting ATP synthase activity, rotational mechanism 14.7422820889757 bayes_pls_golite062009
hydrogen ion transmembrane transporter activity 12.9278793563887 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 11.1783751674743 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 10.0680074813957 bayes_pls_golite062009
cation transmembrane transporter activity 6.33234611151135 bayes_pls_golite062009
ion transmembrane transporter activity 6.2273693570543 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 5.80354336411519 bayes_pls_golite062009
transporter activity 4.02094516916098 bayes_pls_golite062009
substrate-specific transporter activity 3.93981768923161 bayes_pls_golite062009
transmembrane transporter activity 3.93135059223129 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle