YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|227849735, gi...
Organism:	Lactobacillus johnsonii ATCC 33200
Length:	435 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|227849735, gi....

Description	E-value	Query Range	Subject Range
DER_LACDA - GTPase Der OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081 / JCM 1002 ... ENGA_LACDE - (Q8KH12) Probable GTP-binding protein engA DER_LACDB - GTPase Der OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=der PE=3 SV=1	305.0	[0..1]	[435..1]
ENGA_LACAC - GTP-binding protein engA OS=Lactobacillus acidophilus GN=engA PE=3 SV=1 DER_LACAC - GTPase Der OS=Lactobacillus acidophilus (strain ATCC 700396 / NCK56 / N2 / NCFM) GN=der PE=3 SV=1	298.0	[0..1]	[435..1]
DER_LACC3 - GTPase Der OS=Lactobacillus casei (strain ATCC 334) GN=der PE=3 SV=1	296.0	[0..1]	[435..1]
DER_OCEIH - GTPase Der OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=der PE... ENGA_OCEIH - GTP-binding protein engA OS=Oceanobacillus iheyensis GN=engA PE=3 SV=1	296.0	[0..1]	[435..1]
DER_LISMC - GTPase Der OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=der PE=3 SV=1 gi\|254825568 - gi\|254825568\|ref\|ZP_05230569.1\| GTP-binding protein EngA [Listeria monocytogenes FSL J1-194] ENGA_LISMC - GTP-binding protein engA OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=engA PE=3 SV=1 gi\|254993214 - gi\|254993214\|ref\|ZP_05275404.1\| GTP-binding protein EngA [Listeria monocytogenes FSL J2-064] gi\|254877945 - gi\|254877945\|ref\|ZP_05250655.1\| GTP-binding protein EngA [Listeria monocytogenes FSL J2-071] gi\|255028956 - gi\|255028956\|ref\|ZP_05300907.1\| GTP-binding protein EngA [Listeria monocytogenes LO28] gi\|153196444, gi... - gi\|254831462\|ref\|ZP_05236117.1\| GTP-binding protein EngA [Listeria monocytogenes 10403S], gi\|1531964... gi\|254899366, gi... - gi\|254899366\|ref\|ZP_05259290.1\| GTP-binding protein EngA [Listeria monocytogenes J0161], gi\|15318342... gi\|133726665, gi... - gi\|254871620\|ref\|ZP_05244330.1\| GTP-binding protein EngA [Listeria monocytogenes FSL N1-017], gi\|153... gi\|153191436, gi... - gi\|254912495\|ref\|ZP_05262507.1\| GTP-binding protein EngA [Listeria monocytogenes J2818], gi\|15319143... gi\|133732163, gi... - gi\|254936822\|ref\|ZP_05268519.1\| GTP-binding protein EngA [Listeria monocytogenes F6900], gi\|15317998... gi\|133729617, gi... - gi\|254827178\|ref\|ZP_05231865.1\| GTP-binding protein EngA [Listeria monocytogenes FSL N3-165], gi\|153... DER_LISMO, ENGA_... - GTP-binding protein engA OS=Listeria monocytogenes GN=engA PE=3 SV=1, GTPase Der OS=Listeria monocyt... gi\|133735000, gi... - gi\|254931892\|ref\|ZP_05265251.1\| GTP-binding protein EngA [Listeria monocytogenes HPB2262], gi\|153202... gi\|224501264 - gi\|224501264\|ref\|ZP_03669571.1\| GTP-binding protein EngA [Listeria monocytogenes FSL R2-561] gi\|224498613 - gi\|224498613\|ref\|ZP_03666962.1\| GTP-binding protein EngA [Listeria monocytogenes Finland 1988] DER_LISMF - GTPase Der OS=Listeria monocytogenes serotype 4b (strain F2365) GN=der PE=3 SV=1 DER_LISMH - GTPase Der OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=der PE=3 SV=1 DER_LISMO - GTPase Der OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=der PE=3 SV=1	294.0	[0..1]	[435..1]
DER_PELCD - GTPase Der OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=der PE=3 SV=1	294.0	[0..5]	[434..3]
DER_BACSU - GTPase Der OS=Bacillus subtilis (strain 168) GN=der PE=1 SV=1 ENGA_BACSU, DER_... - GTP-binding protein engA OS=Bacillus subtilis GN=engA PE=1 SV=1, GTPase Der OS=Bacillus subtilis GN=... gi\|221319445 - gi\|221319445\|ref\|ZP_03600739.1\| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. JH6... gi\|221323721 - gi\|221323721\|ref\|ZP_03605015.1\| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. SMY... gi\|221314523 - gi\|221314523\|ref\|ZP_03596328.1\| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. NCI...	294.0	[0..1]	[435..1]
ENGA_LISIN, DER_... - GTP-binding protein engA OS=Listeria innocua GN=engA PE=3 SV=1, GTPase Der OS=Listeria innocua GN=de... DER_LISIN - GTPase Der OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=der PE=3 SV=1	294.0	[0..1]	[435..1]
gi\|27262166 - gi\|27262166\|gb\|AAN87364.1\| GTP-binding protein [Heliobacillus mobilis]	291.0	[0..1]	[435..4]

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Predicted Domain #1

Region A:
Residues: [1-435]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPVVALVG RPNVGKSTIF NRIINSRVAI VEDKAGVTRD RIYARAEWMG HEFILIDTGG  60
   61 ITLDSGEIEE QIKAQAEIAI DEADVIVMLG DVTQHMTNMD ETIAKMLYRT KKPVILAINK 120
  121 ADNPEQRTDI YDFYSLGLGD PIPVSGSHGT GMGDLLDAIV GEFGDKANQH EDGSIRFSVI 180
  181 GRPNVGKSSL VNAILGEQRV IVSNIEGTTR DAIDTTFTND GQKYTIVDTA GIRRRGKVYE 240
  241 KTEKYSVLRA ISAIEESDIT LLVLDASTGI REQDKHVAGY AHDAGRGVII VVNKWDLPKK 300
  301 DSRSMKDFED TIRREFQYLD YAPIIFVSAK TGQRVPDILK LVKEVHENQT RRIQSSVLND 360
  361 LLLEATRITP TPLVNGKRLR IYYMTQVAVT PPTFVVFVND PELLHFSYQR FLINQLRQNF 420
  421 DFVGTPIKIL ARKRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	79.30103
Match:	2hjgA
Description:	No description for 2hjgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits