YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|241907011, gi...
Organism:	Desulfovibrio vulgaris RCH1
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|241907011, gi....

Description	E-value	Query Range	Subject Range
RL14_SYMTH - 50S ribosomal protein L14 OS=Symbiobacterium thermophilum (strain T / IAM 14863) GN=rplN PE=3 SV=1 RL14_SYMTH - 50S ribosomal protein L14 OS=Symbiobacterium thermophilum GN=rplN PE=3 SV=1	1.0E-50	[1..122]	[1..122]
gi\|83720943, gi\|... - gi\|83720943\|ref\|YP_443562.1\| ribosomal protein L14 [Burkholderia thailandensis E264], gi\|83654768\|gb...	2.0E-50	[1..122]	[61..182]
gi\|105894482, gi... - gi\|107024293\|ref\|YP_622620.1\| ribosomal protein L14 [Burkholderia cenocepacia AU 1054], gi\|105894482...	4.0E-50	[1..122]	[58..179]
gi\|76809421, gi\|... - gi\|76809421\|ref\|YP_335130.1\| 50S ribosomal protein L14 [Burkholderia pseudomallei 1710b], gi\|7657887...	8.0E-50	[1..122]	[41..162]
RL14_THEEB - 50S ribosomal protein L14 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplN PE=3 SV=1 RL14_SYNEL - 50S ribosomal protein L14 OS=Synechococcus elongatus GN=rplN PE=3 SV=1	1.0E-49	[1..122]	[1..122]
gi\|89516786, gi\|... - gi\|89891142\|ref\|ZP_01202650.1\| 50S ribosomal protein L14 RplN [Flavobacteria bacterium BBFL7], gi\|89...	2.0E-49	[1..122]	[1..122]
RL14_XANAC - 50S ribosomal protein L14 OS=Xanthomonas axonopodis pv. citri (strain 306) GN=rplN PE=3 SV=1 RL14_XANCP - 50S ribosomal protein L14 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / N... RL14_XANCP - 50S ribosomal protein L14 OS=Xanthomonas campestris pv. campestris GN=rplN PE=3 SV=1 RL14_XANC5 - 50S ribosomal protein L14 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rplN PE=3 SV=1 RL14_XANCB - 50S ribosomal protein L14 OS=Xanthomonas campestris pv. campestris (strain B100) GN=rplN PE=3 SV=1 RL14_XANC8 - 50S ribosomal protein L14 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rplN PE=3 SV=1 RL14_XANAC - 50S ribosomal protein L14 OS=Xanthomonas axonopodis pv. citri GN=rplN PE=3 SV=1	4.0E-49	[1..122]	[1..122]
RL14_SALRD - 50S ribosomal protein L14 OS=Salinibacter ruber (strain DSM 13855 / M31) GN=rplN PE=3 SV=1	5.0E-49	[1..122]	[1..122]
gi\|84494776, gi\|... - gi\|84494776\|ref\|ZP_00993895.1\| putative ribosomal protein L14 [Janibacter sp. HTCC2649], gi\|84384269...	6.0E-49	[1..122]	[1..122]
RL14_RHOOB - 50S ribosomal protein L14 OS=Rhodococcus opacus (strain B4) GN=rplN PE=3 SV=1 RL14_RHOJR - 50S ribosomal protein L14 OS=Rhodococcus jostii (strain RHA1) GN=rplN PE=3 SV=1	6.0E-49	[1..122]	[1..122]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIQVESTLQV ADNSGAKKVA CIKVLGGSHR RYATVGDIIM VSVKEAMPHC KVKKGDVMQA  60
   61 VIVRTAKEVR RADGSYIKFD SNAAVLLNKQ GEPVGTRIFG PVARELRARN FMKIVSLAPE 120
  121 VL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.69897
Match:	2j01O
Description:	No description for 2j01O was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits